Publications
2020 - present
Ellison, E. E., Nagalakshmi, U., Gamo, M. E., Huang, P., Dinesh-Kumar, S. P., Voytas, D. (2020) Multiplexed heritable gene editing using RNA viruses and mobile single guide RNAs. Nature Plants Jun 1. doi: 10.1038/s41477-020-0670-y. Online ahead of print. [Abstract]
Zhang, Y., Li, Y., Yang, X., Wen, Z., Nagalakshmi, U., and Dinesh-Kumar, S. P. (2020) TurboID-based proximity labeling for in planta identification of protein-protein interaction networks. J Vis Exp. May 17;(159). doi: 10.3791/60728. [Abstract]
*Lee, D., *Lal, N. K., (*contributed equally) Lin, Z. D., Ma, S., Liu, J., Castro, B., Dinesh-Kumar, S. P., Coaker, G. (2020) Regulation of reactive oxygen species during plant immunity through phosphorylation and ubiquitination of RBOHD. Nature Communications 11:1838. [Abstract]
Xu, T., Nagalakshmi, U., and Dinesh-Kumar, S. P. (2020) Virus-induced gene silencing (VIGS). Encyclopedia of Virology, 4th edition. Ed. C. Fauquet; Elsevier publishing. (in press).
Ellison, E. E., Nagalakshmi, U., Gamo, M. E., Huang, P., Dinesh-Kumar, S. P., Voytas, D. (2020) Multiplexed heritable gene editing using RNA viruses and mobile single guide RNAs. Nature Plants Jun 1. doi: 10.1038/s41477-020-0670-y. Online ahead of print. [Abstract]
Zhang, Y., Li, Y., Yang, X., Wen, Z., Nagalakshmi, U., and Dinesh-Kumar, S. P. (2020) TurboID-based proximity labeling for in planta identification of protein-protein interaction networks. J Vis Exp. May 17;(159). doi: 10.3791/60728. [Abstract]
*Lee, D., *Lal, N. K., (*contributed equally) Lin, Z. D., Ma, S., Liu, J., Castro, B., Dinesh-Kumar, S. P., Coaker, G. (2020) Regulation of reactive oxygen species during plant immunity through phosphorylation and ubiquitination of RBOHD. Nature Communications 11:1838. [Abstract]
Xu, T., Nagalakshmi, U., and Dinesh-Kumar, S. P. (2020) Virus-induced gene silencing (VIGS). Encyclopedia of Virology, 4th edition. Ed. C. Fauquet; Elsevier publishing. (in press).
2015 - 2019
Zhang, Y., Song, G., Lal, N. K., Nagalakshmi, U., Li, Y., Zhen, W., Huang, P., Branon, T. C., Ting, A. Y., Walley, J. W., Dinesh-Kumar, S. P. (2019) TurboID-based proximity labeling reveals that UBR7 is a regulator of N NLR immune receptor-mediated immunity. Nature Communications 10(1):3252. [Abstract]
Miller, W. A. and Dinesh-Kumar, S. P. (2019) A new mechanism for translational control in plants. FEBS Journal 286:3775-3777. [Abstract]
*Meier, N., *Hatch, C., (*contributed equally) Nagalakshmi, U., Dinesh-Kumar, S. P. (2019) Perspectives on intracellular perception of plant viruses. Molecular Plant Pathology 20:1185-1190. [Abstract]
Li, Y., Sun, Q., Zhao, T., Xiang, H., Zhang, X., Wu, Z., Zhou, C., Zhang, X., Wang, Y., Zhang, Y., Wang, X., Li, D., Yu, J., Dinesh-Kumar, S.P., and Han, C. (2019) Interaction between brassica yellows virus silencing suppressor P0 and plant SKP1 facilitates stability of P0 in vivo against degradation by proteasome and autophagy pathways. New Phytologist 222:1458-1473. [Abstract]
Li, J., Huang, H., Zhu, M., Huang, S., Zhang, W., Dinesh-Kumar, S.P. and Tao, X. (2019) A plant immune receptor adopts a two-step recognition mechanism to enhance its perception of viral pathogen effector. Molecular Plant 12:248-262. [Abstract]
Lal, N.K., *Nagalakshmi, U., *Hurlburt, N.K., (*contributed equally) Flores, R., Bak, A., Sone, P., Ma, X., Song, G., Walley, J., Shan, L., He, P., Casteel, C., Fisher, A.J., and Dinesh-Kumar, S.P. (2018) The receptor-like cytoplasmic kinase BIK1 localizes to the nucleus and regulates defense hormone expression during plant innate immunity. Cell Host & Microbe 23:485-497. [Abstract]
*Kumar, A.S., *Park, E., (*contributed equally) Nedo, A., Alqarni, A., Ren, L., Hoban, K., Modla, S., McDonald, J. H., Kambhamettu, C., 1Dinesh-Kumar, S.P., and 1Caplan, J. (1corresponding authors) (2018) Sromule extension along microtubules coordinate with actin-mediated anchoring guides perinuclear chloroplast movement during innate immunity. eLife 7:e23625. doi: 10.7554/eLife.23625. [Abstract]
Zhang, M., Chiang, Y., Toruno, T.Y., Lee, D., Liang, X., Ma, M., Lal, N. K., Lemos, M., Ma, S., Liu, J., Day, B., Dinesh-Kumar, S.P., Dehesh, K., Dou, D., Zhou, J-M., and Coaker, G. (2018) The MAP4 kinase SIK1 ensures robust extracellular ROS burst and antibacterial immunity in plants. Cell Host & Microbe 24:379-391. [Abstract]
Park, E., Caplan, J.L., and Dinesh-Kumar, S.P. (2018) Dynamic coordination of plastid morphology change by cytoskeleton for chloroplast-nucleus communicaiton during plant immune responses. Plant Signal Behav.13:e1500064. [Abstract]
Senthil-Kumar, M., Wang, M., Chang, J., Ramegowda, V., del Pozo, O., Liu, Y., Doraiswamy, V., Lee, H., Ryu, C., Wang, K., Xu, P., Van Eck, J., Chakravarthy, S., Dinesh-Kumar, S., Martin, G.B. and Mysore, K.S. (2018) VIGS database for phenomics and functional genomics in Nicotiana benthamiana. Plant Direct 2:e00055. [Abstract]
Park, E., Nedo, A., Caplan, J., and Dinesh-Kumar, S.P. (2018) Plant-microbe interactions: Organelles and the cytoskeleton in action. New Phytologist 217:1012-1028. [Abstract]
Zhu, M., Jiang, L., Bai, B., Zhao, W., Chen, X., Li, J., Liu, Y., Chen, Z., Wang, B., Wang, C., Wu, Q., Shen, Q., Dinesh-Kumar, S.P., and Tao, X. (2017) Sw-5b NLR confers broad-spectrum resistance to tospoviruses through recognition of a conserved 21-amino acid viral effector epitope. Plant Cell 29:2214-2232. [Abstract]
Park, E., Lee, H-Y., Woo, J., Choi, D., and Dinesh-Kumar, S.P. (2017) Spatiotemporal monitoring of Pseudomonas effectors via type III secretion using split fluorescent protein fragments. Plant Cell 29:1571-1584.
[Abstract]
Ma, S., Snyder, M., and Dinesh-Kumar, S.P. (2017) Discovery of novel human gene regulatory modules from gene co-expression and promoter motif analysis. Sci Rep 7:5557. [Abstract]
Woo, J., Hong, J., and Dinesh-Kumar, S.P. (2017) Bioluminescence resonance energy transfer (BRET)-based synthetic sensor platform for drug discovery. Curr Protoc Protein Sci. 88:19.30.1-19.30.12. [Abstract]
Michelmore R, Coaker G, Bart R, Beattie G, Bent A, Bruce T, Cameron D, Dangl J, , Edwards R, Eves-van den Akker S, Gassmann W, Greenberg JT, Hanley-Bowdoin L, Harrison RJ, Harvey J, He P, Huffaker A, Hulbert S, Innes R, Jones JDG, Kaloshian I, Kamoun S, Katagiri F, Leach J, Ma W, McDowell J, Medford J, Meyers B, Nelson R, Oliver R, Qi Y, Saunders D, Shaw M, Smart C, Subudhi P, Torrance L, Tyler B, Valent B, Walsh J. (2017) Foundational and translational research opportunities to improve plant health. Mol Plant-Microbe Interact 30:515. [Abstract]
Seo, E., Woo, J., Park, E., Choi, D., Dinesh-Kumar, S.P. (2016) Comparative analyses of ubiquitin-like ATG8 and cysteine protease ATG4 autophagy genes in the plant lineage and cross-kingdom processing of ATG8 by ATG4. Autophagy 12:2054-2068. [Abstract]
Lal, N., Fisher, A.J., and Dinesh-Kumar, S.P. (2016) Arabidopsis receptor-like cytoplasmic kinase BIK1: purification, crystallization and X-ray diffraction analysis. Acta Cryst F72:738-742. [Abstract]
Feng, B., Ma, S., Chen, S., Zhu, N., Zhang, S., Yu, B., Yu, Y., Le, B., Chen, X., Dinesh-Kumar, S.P, Shan, L., and He, P. (2016) Identification of poly(ADP-ribosyl)ation targets reveals a role of DAWDLE in Arabidopsis immunity. EMBO Rep 17:1799-1813. [Abstract]
Fondong, V., Nagalakshmi, U., and Dinesh-Kumar, S.P. (2016) Novel functional genomics approaches: A priming future in the combat against plant viruses. Phytopathology 106:1231-1239. [Abstract]
Lemos, M., Xiao, Y., Bjornson, M., Wang, J., Hicks, D., de Souza, A., Wang, C., Yang, P., Ma, S., Dinesh-Kumar, S.P., and Dehesh, K. (2016) The plastidial retrograde signal methyl erythritol cyclopyrophosphate is a regulator of salicylic acid and jasmonic acid crosstalk. J Exp Bot 67:1557-1566. [Abstract]
Klionsky D.J., et al., (2016) Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). Autophagy 12:222. [Abstract]
Caplan, J., Kumar, AS., Park, E., Padmanabhan, MS., Hoban, K., Modla, S., Czymmek, K., and Dinesh-Kumar, SP (2015). Chloroplast stromules function during innate immunity. Dev Cell 34:45-57. (Cover article). [Abstract]
Suter, B., Zhang, X., Pesce, C.G., Mendelsohn, A.R., Dinesh-Kumar, S.P., and Mao, J.H. (2015) Next-generation sequencing for binary protein-protein interactions. Front Genet 6:346. [Abstract]
Ali, Z., Abul-Faraj, A., Li, L., Ghosh, N., Piatek, M., Mahjoub, A., Aouida, M., Piatek, A., Baltes, N., Voytas, D., Dinesh-Kumar, SP., Mahfouz, M. (2015) Efficient virus-mediated genome editing in plants using the CRISPR/Cas9 system. Mol Plant 8:1288-1291. [Abstract]
Ma, S., and Dinesh-Kumar, SP (2015) Plant protein kinase substrates identification using protein microarrays. Methods Mol Biol 1306:159-165. [Abstract]
Manohar, M., Tian, M., Moreau, M., Park, S., Choi, H., Fei, Z., Friso, G., Asif, M., Manosalva, P., von Dahl C., Shi, K., Ma, S., Dinesh-Kumar, SP., O’Doherty, I., Schroeder, F., van Wijk, K., and Klessig, D. (2015) Identification of multiple salicylic acid-binding proteins using two high throughput screens. Front Plant Sci 5:777. [Abstract]
Ma S., Bohnert, HJ., Dinesh-Kumar, SP (2015) AtGGM2014, an Arabidopsis gene co-expression network for functional studies. Sci China Life Sci. 58:276-286. [Abstract]
Zhang, Y., Song, G., Lal, N. K., Nagalakshmi, U., Li, Y., Zhen, W., Huang, P., Branon, T. C., Ting, A. Y., Walley, J. W., Dinesh-Kumar, S. P. (2019) TurboID-based proximity labeling reveals that UBR7 is a regulator of N NLR immune receptor-mediated immunity. Nature Communications 10(1):3252. [Abstract]
- in Plantae - Plant Science Research Weekly [Abstract]
Miller, W. A. and Dinesh-Kumar, S. P. (2019) A new mechanism for translational control in plants. FEBS Journal 286:3775-3777. [Abstract]
*Meier, N., *Hatch, C., (*contributed equally) Nagalakshmi, U., Dinesh-Kumar, S. P. (2019) Perspectives on intracellular perception of plant viruses. Molecular Plant Pathology 20:1185-1190. [Abstract]
Li, Y., Sun, Q., Zhao, T., Xiang, H., Zhang, X., Wu, Z., Zhou, C., Zhang, X., Wang, Y., Zhang, Y., Wang, X., Li, D., Yu, J., Dinesh-Kumar, S.P., and Han, C. (2019) Interaction between brassica yellows virus silencing suppressor P0 and plant SKP1 facilitates stability of P0 in vivo against degradation by proteasome and autophagy pathways. New Phytologist 222:1458-1473. [Abstract]
Li, J., Huang, H., Zhu, M., Huang, S., Zhang, W., Dinesh-Kumar, S.P. and Tao, X. (2019) A plant immune receptor adopts a two-step recognition mechanism to enhance its perception of viral pathogen effector. Molecular Plant 12:248-262. [Abstract]
Lal, N.K., *Nagalakshmi, U., *Hurlburt, N.K., (*contributed equally) Flores, R., Bak, A., Sone, P., Ma, X., Song, G., Walley, J., Shan, L., He, P., Casteel, C., Fisher, A.J., and Dinesh-Kumar, S.P. (2018) The receptor-like cytoplasmic kinase BIK1 localizes to the nucleus and regulates defense hormone expression during plant innate immunity. Cell Host & Microbe 23:485-497. [Abstract]
*Kumar, A.S., *Park, E., (*contributed equally) Nedo, A., Alqarni, A., Ren, L., Hoban, K., Modla, S., McDonald, J. H., Kambhamettu, C., 1Dinesh-Kumar, S.P., and 1Caplan, J. (1corresponding authors) (2018) Sromule extension along microtubules coordinate with actin-mediated anchoring guides perinuclear chloroplast movement during innate immunity. eLife 7:e23625. doi: 10.7554/eLife.23625. [Abstract]
Zhang, M., Chiang, Y., Toruno, T.Y., Lee, D., Liang, X., Ma, M., Lal, N. K., Lemos, M., Ma, S., Liu, J., Day, B., Dinesh-Kumar, S.P., Dehesh, K., Dou, D., Zhou, J-M., and Coaker, G. (2018) The MAP4 kinase SIK1 ensures robust extracellular ROS burst and antibacterial immunity in plants. Cell Host & Microbe 24:379-391. [Abstract]
Park, E., Caplan, J.L., and Dinesh-Kumar, S.P. (2018) Dynamic coordination of plastid morphology change by cytoskeleton for chloroplast-nucleus communicaiton during plant immune responses. Plant Signal Behav.13:e1500064. [Abstract]
Senthil-Kumar, M., Wang, M., Chang, J., Ramegowda, V., del Pozo, O., Liu, Y., Doraiswamy, V., Lee, H., Ryu, C., Wang, K., Xu, P., Van Eck, J., Chakravarthy, S., Dinesh-Kumar, S., Martin, G.B. and Mysore, K.S. (2018) VIGS database for phenomics and functional genomics in Nicotiana benthamiana. Plant Direct 2:e00055. [Abstract]
Park, E., Nedo, A., Caplan, J., and Dinesh-Kumar, S.P. (2018) Plant-microbe interactions: Organelles and the cytoskeleton in action. New Phytologist 217:1012-1028. [Abstract]
Zhu, M., Jiang, L., Bai, B., Zhao, W., Chen, X., Li, J., Liu, Y., Chen, Z., Wang, B., Wang, C., Wu, Q., Shen, Q., Dinesh-Kumar, S.P., and Tao, X. (2017) Sw-5b NLR confers broad-spectrum resistance to tospoviruses through recognition of a conserved 21-amino acid viral effector epitope. Plant Cell 29:2214-2232. [Abstract]
Park, E., Lee, H-Y., Woo, J., Choi, D., and Dinesh-Kumar, S.P. (2017) Spatiotemporal monitoring of Pseudomonas effectors via type III secretion using split fluorescent protein fragments. Plant Cell 29:1571-1584.
[Abstract]
- See preview in Mach, J (2017) Plant Cell 29:1547-1548 [Abstract]
Ma, S., Snyder, M., and Dinesh-Kumar, S.P. (2017) Discovery of novel human gene regulatory modules from gene co-expression and promoter motif analysis. Sci Rep 7:5557. [Abstract]
Woo, J., Hong, J., and Dinesh-Kumar, S.P. (2017) Bioluminescence resonance energy transfer (BRET)-based synthetic sensor platform for drug discovery. Curr Protoc Protein Sci. 88:19.30.1-19.30.12. [Abstract]
Michelmore R, Coaker G, Bart R, Beattie G, Bent A, Bruce T, Cameron D, Dangl J, , Edwards R, Eves-van den Akker S, Gassmann W, Greenberg JT, Hanley-Bowdoin L, Harrison RJ, Harvey J, He P, Huffaker A, Hulbert S, Innes R, Jones JDG, Kaloshian I, Kamoun S, Katagiri F, Leach J, Ma W, McDowell J, Medford J, Meyers B, Nelson R, Oliver R, Qi Y, Saunders D, Shaw M, Smart C, Subudhi P, Torrance L, Tyler B, Valent B, Walsh J. (2017) Foundational and translational research opportunities to improve plant health. Mol Plant-Microbe Interact 30:515. [Abstract]
Seo, E., Woo, J., Park, E., Choi, D., Dinesh-Kumar, S.P. (2016) Comparative analyses of ubiquitin-like ATG8 and cysteine protease ATG4 autophagy genes in the plant lineage and cross-kingdom processing of ATG8 by ATG4. Autophagy 12:2054-2068. [Abstract]
Lal, N., Fisher, A.J., and Dinesh-Kumar, S.P. (2016) Arabidopsis receptor-like cytoplasmic kinase BIK1: purification, crystallization and X-ray diffraction analysis. Acta Cryst F72:738-742. [Abstract]
Feng, B., Ma, S., Chen, S., Zhu, N., Zhang, S., Yu, B., Yu, Y., Le, B., Chen, X., Dinesh-Kumar, S.P, Shan, L., and He, P. (2016) Identification of poly(ADP-ribosyl)ation targets reveals a role of DAWDLE in Arabidopsis immunity. EMBO Rep 17:1799-1813. [Abstract]
Fondong, V., Nagalakshmi, U., and Dinesh-Kumar, S.P. (2016) Novel functional genomics approaches: A priming future in the combat against plant viruses. Phytopathology 106:1231-1239. [Abstract]
Lemos, M., Xiao, Y., Bjornson, M., Wang, J., Hicks, D., de Souza, A., Wang, C., Yang, P., Ma, S., Dinesh-Kumar, S.P., and Dehesh, K. (2016) The plastidial retrograde signal methyl erythritol cyclopyrophosphate is a regulator of salicylic acid and jasmonic acid crosstalk. J Exp Bot 67:1557-1566. [Abstract]
Klionsky D.J., et al., (2016) Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). Autophagy 12:222. [Abstract]
Caplan, J., Kumar, AS., Park, E., Padmanabhan, MS., Hoban, K., Modla, S., Czymmek, K., and Dinesh-Kumar, SP (2015). Chloroplast stromules function during innate immunity. Dev Cell 34:45-57. (Cover article). [Abstract]
- See preview in Gu, Y and Dong, X. Dev Cell 34: 3-4. [Abstract]
- See editor's choice in VanHook A. Sci. Signal 8:ec191. [Editors' Choice]
Suter, B., Zhang, X., Pesce, C.G., Mendelsohn, A.R., Dinesh-Kumar, S.P., and Mao, J.H. (2015) Next-generation sequencing for binary protein-protein interactions. Front Genet 6:346. [Abstract]
Ali, Z., Abul-Faraj, A., Li, L., Ghosh, N., Piatek, M., Mahjoub, A., Aouida, M., Piatek, A., Baltes, N., Voytas, D., Dinesh-Kumar, SP., Mahfouz, M. (2015) Efficient virus-mediated genome editing in plants using the CRISPR/Cas9 system. Mol Plant 8:1288-1291. [Abstract]
Ma, S., and Dinesh-Kumar, SP (2015) Plant protein kinase substrates identification using protein microarrays. Methods Mol Biol 1306:159-165. [Abstract]
Manohar, M., Tian, M., Moreau, M., Park, S., Choi, H., Fei, Z., Friso, G., Asif, M., Manosalva, P., von Dahl C., Shi, K., Ma, S., Dinesh-Kumar, SP., O’Doherty, I., Schroeder, F., van Wijk, K., and Klessig, D. (2015) Identification of multiple salicylic acid-binding proteins using two high throughput screens. Front Plant Sci 5:777. [Abstract]
Ma S., Bohnert, HJ., Dinesh-Kumar, SP (2015) AtGGM2014, an Arabidopsis gene co-expression network for functional studies. Sci China Life Sci. 58:276-286. [Abstract]
2010-2014
Padmanabhan, MS and Dinesh-Kumar, SP (2014) The conformational and subcellular compartmental dance of plant NLRs during viral recognition and defense signaling. Curr Opin Microbiol. 20:55-61. [Abstract]
Woo, J. C., Park, E., and Dinesh-Kumar, SP (2014) Differential processing of Arabidopsis ubiquitin-like Atg8 autophagy proteins by Atg4 cysteine proteases. Proc. Natl Acad. Sci. 111:863-868. [Abstract]
Park, E., Woo, J.C., and Dinesh-Kumar, SP (2014) Arabidopsis ATG4 cysteine proteases specificity towards ATG8 substrates. Autophagy 10:926-927. [Abstract]
Ma, S., Shah, S., Bohnert, HJ., Snyder, M., and Dinesh-Kumar SP (2013) Incorporating motif analysis into gene co-expression networks reveals novel modular expression pattern and new signaling pathways. PLoS Genetics 9:e1003840. [Abstract]
Padmanabhan, M., Ma, S., Burch-Smith, T., Czymmek, K., Huijser, P., Dinesh-Kumar, S. P. (2013) Novel positive regulatory role for the SPL6 transcription factor in the N TIR-NB-LRR receptor-mediated plant innate immunity. PLoS Pathogens 9:e1003235. [Abstract]
Ma S, Bachan S, Porto M, Bohnert HJ, Snyder M and Dinesh-Kumar SP. (2012) Discovery of stress responsive DNA regulatory motifs in Arabidopsis. PLoS ONE 7:e43198. [Abstract]
Ho, C. M., Lee, Y.R., Kiyama, L.D., Dinesh-Kumar, S.P., and Liu, B. (2012) Arabidopsis microtubule-associated protein MAP65-3 cross-links antiparallel microtubules toward their plus ends in the phragmoplast via its distinct C-terminal microtubule binding domain. Plant Cell 24:2071-2085. [Abstract]
Bachan, S., and Dinesh-Kumar, S.P. (2012) Tobacco rattle virus (TRV)-based virus-induced gene silencing. Methods Mol Biol. 894:83-92. [Abstract]
Klionsky D., et al., (2012) Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy 8:445-544. [Abstract]
Lee, H.Y., Bowen, C.H., Popescu, G.V., Kang, H., Kato, N., Ma, S., Dinesh-Kumar, S.P., Snyder, M., and Popescu, S.C. (2011) RTNLB1 and RTNLB2 Reticulon-Like Proteins Regulate Intracellular Trafficking and Activity of the FLS2 Immune Receptor. Plant Cell. 9 3374-3391 [Abstract]
Hayward AP and Dinesh-Kumar SP. (2011) What can autophagy do for an innate immune response? Annu Rev Phytopathol. 49, 557-576 [Abstract]
Cournoyer P and Dinesh-Kumar SP. (2011) Studying NB-LRR Immune Receptor localization by Agroinfiltration Transient Expression. Methos Mol Biol. 712, 1-8. [Abstract]
Cournoyer P and Dinesh-Kumar SP. (2011) NB-LRR Immune Receptors in Plant Virus Defense. In Recent Advances in Plant Virology. Ed. Caranta, C., Aranda, M., Tepfer, M., and Lopez-Moya, JJ. Horizon Press. pp149-176.
Hayward A, Padmanabhan M, and Dinesh-Kumar SP. (2011) Virus-induced gene silencing in Nicotiana benthamiana and other plant species. Methods Mol Biol. 678, 55-63. [Abstract]
Zhu X, Caplan JC, Mamillapalli P, Czymmek K, and Dinesh-Kumar SP. (2010) Function of endoplasmic reticulum calcium ATPase in innate immunity mediated programmed cell death. EMBO J 29, 1007-1018. [Abstract]
Padmanabhan M and Dinesh-Kumar SP. (2010) All Hands on Deck - the Role of Chloroplasts, ER and Nucleus in Driving Plant Innate Immunity. Mol Plant Microbe Interact 23, 1368-1380. [Abstract]
Hayward A and Dinesh-Kumar SP. (2010). Special delivery for MHC II via autophagy. Immunity 32, 587-590. [Abstract]
Keri W, Srinivasa U, Zhu X, Dinesh-Kumar SP, and Mysore K. (2010) SGT1 positively regulates the process of plant cell death during both compatible and incompatible plant-pathogen interactions. Mol Plant Pathol 11, 597-611. [Abstract]
Zhu X, Pattathil S, Mazumder K, Brehm A, Hahn M, Dinesh-Kumar SP, and Joshi C. (2010). Virus-induced gene silencing offers a functional genomics platform for studying plant cell wall formation. Mol Plant 3, 818-833. (Cover Article). [Abstract]
Burch-Smith, T., and Dinesh-Kumar, S.P. (2010) Driving Innate Immunity: ‘R’ we there yet? Biology of Plant-Microbe Interactions Vol. 6.
Woo, J. C., Park, E., and Dinesh-Kumar, SP (2014) Differential processing of Arabidopsis ubiquitin-like Atg8 autophagy proteins by Atg4 cysteine proteases. Proc. Natl Acad. Sci. 111:863-868. [Abstract]
Park, E., Woo, J.C., and Dinesh-Kumar, SP (2014) Arabidopsis ATG4 cysteine proteases specificity towards ATG8 substrates. Autophagy 10:926-927. [Abstract]
Ma, S., Shah, S., Bohnert, HJ., Snyder, M., and Dinesh-Kumar SP (2013) Incorporating motif analysis into gene co-expression networks reveals novel modular expression pattern and new signaling pathways. PLoS Genetics 9:e1003840. [Abstract]
Padmanabhan, M., Ma, S., Burch-Smith, T., Czymmek, K., Huijser, P., Dinesh-Kumar, S. P. (2013) Novel positive regulatory role for the SPL6 transcription factor in the N TIR-NB-LRR receptor-mediated plant innate immunity. PLoS Pathogens 9:e1003235. [Abstract]
Ma S, Bachan S, Porto M, Bohnert HJ, Snyder M and Dinesh-Kumar SP. (2012) Discovery of stress responsive DNA regulatory motifs in Arabidopsis. PLoS ONE 7:e43198. [Abstract]
Ho, C. M., Lee, Y.R., Kiyama, L.D., Dinesh-Kumar, S.P., and Liu, B. (2012) Arabidopsis microtubule-associated protein MAP65-3 cross-links antiparallel microtubules toward their plus ends in the phragmoplast via its distinct C-terminal microtubule binding domain. Plant Cell 24:2071-2085. [Abstract]
Bachan, S., and Dinesh-Kumar, S.P. (2012) Tobacco rattle virus (TRV)-based virus-induced gene silencing. Methods Mol Biol. 894:83-92. [Abstract]
Klionsky D., et al., (2012) Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy 8:445-544. [Abstract]
Lee, H.Y., Bowen, C.H., Popescu, G.V., Kang, H., Kato, N., Ma, S., Dinesh-Kumar, S.P., Snyder, M., and Popescu, S.C. (2011) RTNLB1 and RTNLB2 Reticulon-Like Proteins Regulate Intracellular Trafficking and Activity of the FLS2 Immune Receptor. Plant Cell. 9 3374-3391 [Abstract]
Hayward AP and Dinesh-Kumar SP. (2011) What can autophagy do for an innate immune response? Annu Rev Phytopathol. 49, 557-576 [Abstract]
Cournoyer P and Dinesh-Kumar SP. (2011) Studying NB-LRR Immune Receptor localization by Agroinfiltration Transient Expression. Methos Mol Biol. 712, 1-8. [Abstract]
Cournoyer P and Dinesh-Kumar SP. (2011) NB-LRR Immune Receptors in Plant Virus Defense. In Recent Advances in Plant Virology. Ed. Caranta, C., Aranda, M., Tepfer, M., and Lopez-Moya, JJ. Horizon Press. pp149-176.
Hayward A, Padmanabhan M, and Dinesh-Kumar SP. (2011) Virus-induced gene silencing in Nicotiana benthamiana and other plant species. Methods Mol Biol. 678, 55-63. [Abstract]
Zhu X, Caplan JC, Mamillapalli P, Czymmek K, and Dinesh-Kumar SP. (2010) Function of endoplasmic reticulum calcium ATPase in innate immunity mediated programmed cell death. EMBO J 29, 1007-1018. [Abstract]
Padmanabhan M and Dinesh-Kumar SP. (2010) All Hands on Deck - the Role of Chloroplasts, ER and Nucleus in Driving Plant Innate Immunity. Mol Plant Microbe Interact 23, 1368-1380. [Abstract]
Hayward A and Dinesh-Kumar SP. (2010). Special delivery for MHC II via autophagy. Immunity 32, 587-590. [Abstract]
Keri W, Srinivasa U, Zhu X, Dinesh-Kumar SP, and Mysore K. (2010) SGT1 positively regulates the process of plant cell death during both compatible and incompatible plant-pathogen interactions. Mol Plant Pathol 11, 597-611. [Abstract]
Zhu X, Pattathil S, Mazumder K, Brehm A, Hahn M, Dinesh-Kumar SP, and Joshi C. (2010). Virus-induced gene silencing offers a functional genomics platform for studying plant cell wall formation. Mol Plant 3, 818-833. (Cover Article). [Abstract]
Burch-Smith, T., and Dinesh-Kumar, S.P. (2010) Driving Innate Immunity: ‘R’ we there yet? Biology of Plant-Microbe Interactions Vol. 6.
2005-2009
*Caplan JC, Zhu X, (contributed equally), Mamillapalli P, Marathe R, Anandalakshmi R, and Dinesh-Kumar SP. (2009) Induced ER-chaperones regulate a receptor-like kinase to mediate anti-viral innate immune response in plants. Cell Host Microbe 6, 457-469. [Abstract]
Popescu SC, Popescu G.V, Bachan S, Zhang Z, Gerstein M, Snyder M, and Dinesh-Kumar SP. (2009) MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Genes Dev 23:80-92. [Abstract]
Popescu SC, Popescu GV, Snyder M, and Dinesh-Kumar SP. (2009) Integrated analysis of co-expressed MAP kinase substrates in Arabidopsis thaliana. Plant Signal Behavior 4, 524-527. [Abstract]
*Hayward A, Tsao J, (contributed equally), and Dinesh-Kumar SP. (2009) Autophagy and plant innate immunity: Defense through degradation. Semin Cell Dev Biol 20, 1041-1047. (cover review). [Abstract]
Seay M, Hayward A, Tsao J, and Dinesh-Kumar SP. (2009) Something old, something new: Plant innate immunity and autophagy. Curr Top Microbiol Immunol 335:287-306. [Abstract]
Padmanabhan M and Dinesh-Kumar SP. (2009) Virus induced gene silencing as a tool for delivery of dsRNA into plants. Cold Spring Harb Protoc. Feb;2009(2):pdb.prot5139. [Abstract]
Padmanabhan M, Cournoyer P, and Dinesh-Kumar SP. (2009) The Leucine Rich Repeat Domain in Plant Innate Immunity: A Wealth of Possibilities. Cell Microbiol 11:191-198. [Abstract]
Zhu X and Dinesh-Kumar SP. (2009) Virus induced gene silencing (VIGS) to study gene function in plants. RNA Interference: Methods for Plants & Animals, Ed. T. Doran and C. Helliwell, CABI Publishing, pp 26-49.
Caplan JC, Mamillapalli P, Burch-Smith TM, Czymmek K, and Dinesh-Kumar SP. (2008)Chloroplastic protein NRIP1 mediates innate immune receptor recognition of a viral effector. Cell 132:449-462. [Abstract]
Caplan JC, Padmanabhan M, and Dinesh-Kumar SP. (2008) Plant NB-LRR immune receptors: From recognition to transcriptional reprogramming. Cell Host Microbe 3:126-135. [Abstract]
Patel S and Dinesh-Kumar SP. (2008) Arabidopsis ATG6 is required to limit the pathogen-associated cell death response. Autophagy 4:20-27. [Abstract]
Klionsky DJ, et al., (2008) Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes. Autophagy 4:151-175. [Abstract]
Zhu X, and Dinesh-Kumar SP. (2008) Virus induced gene silencing as a tool to identify host genes affecting viral pathogenicity. Methods Mol Biol 451, 641-648. [Abstract]
Gong W, He K, Covington M, Dinesh-Kumar SP, Snyder M, Harmer SL, Zhu YX, and Deng XW. (2008) The Development of Protein Microarrays and Their Applications in DNA–Protein and Protein–Protein Interaction Analyses of Arabidopsis Transcription Factors. Mol Plant 1:27-41. [Abstract]
Burch-SmithTM, Schiff M, Caplan J, Tsao J, Czymmek K, and Dinesh-Kumar SP. (2007) A novel role for the TIR domain in association with pathogen-derived elicitors. PLoS Biol 5 (3):e68:501-514. [Abstract]
Burch-Smith TM and Dinesh-Kumar SP. (2007) The functions of plant TIR domains. Science STKE 401:pe46. [Abstract]
Seay M and Dinesh-Kumar SP. (2007) Autophagy takes its TOLL on innate immunity. Cell Host Microbe 2:69-70. [Abstract]
Popescu SC, Snyder M, and Dinesh-Kumar SP. (2007) Arabidopsis protein microarrays for the high-throughput identification of protein-protein interactions. Plant Signal Behavior 2: Issue 5. [Abstract]
Bhattarai KK, Li Q, Liu Y, Dinesh-Kumar SP, and Kaloshian I. (2007) The Mi-1-Mediated Pest Resistance Requires Hsp90 and Sgt1. Plant Physiol 144:312-323. [Abstract]
Popescu SC, Popescu GV, Bachan S, Zhang Z, Seay M, Gerstein M, Snyder M, and Dinesh-Kumar SP. (2007) Differential binding of calmodulin related proteins to their targets revealed using high-density Arabidopsis protein microarrays. Proc Natl Acad Sci 104:4730-4735. [Abstract]
Dong Y, Burch-Smith T, Liu Y, Mamillapalli P, and Dinesh-Kumar SP. (2007) A ligation-independent cloning TRV vector for high-throughput virus induced gene silencing identifies roles for NbMADS4-1 and –2 in floral development. Plant Physiol 145:1161-1170. [Abstract]
*Burch-Smith TM, *Schiff M, *Liu Y, (*contributed equally) and Dinesh-Kumar SP. (2006) Efficient virus induced gene silencing in Arabidopsis thaliana. Plant Physiol 142:21-27. [Abstract]
Patel S, Caplan J, and Dinesh-Kumar SP. (2006) Autophagy in control of programmed cell death. Curr Opin Plant Biol 9:391-396. [Abstract]
*Seay M, *Patel S, (*contributed equally) and Dinesh-Kumar SP. (2006) Autophagy and plant innate immunity. Cell Microbiol 8:899-906. [Abstract]
Caplan J and Dinesh-Kumar SP. (2006) Using viral vectors to silence endogenous genes. Curr Protocols Microbiol I6I.6.1-I6I.6.13. [Abstract]
Caplan J and Dinesh-Kumar SP. (2006) Recognition and signal transduction associated with R gene-mediated resistance. “Natural Resistance Mechanisms of Plants to Viruses” Ed. G. Loebenstein and J. P. Carr. Kluwer Academic Publishers, Netherlands . pages 73-98.
*Miller J, *Burch-Smith T, (*contributed equally) and Dinesh-Kumar SP. (2006) Viral Resistance in Plants: Natural and Engineered. Handbook of Plant Virology Ed. Jawaid A. Khan and Jeanne Dijkstra, The Haworth Press, Inc. NY. Pages 221-234.
Seay M and Dinesh-Kumar SP. (2005) Life After Death: Are Autophagy Genes Involved in Cell Death and Survival During Plant Innate Immune Responses? Autophagy 1:185-186. [Abstract]
*Soosaar J, *Burch-Smith TM, (*contributed equally) and Dinesh-Kumar SP. (2005) Mechanisms of plant resistance to viruses. Nature Rev Microbiol 3:789-798. [Abstract]
Liu Y, Schiff M, Czymmek K, Talloczy Z, Levine B, and Dinesh-Kumar SP. (2005) Autophagy regulates programmed cell death during the plant innate immune response. Cell 121:567-577. [Abstract]
Rubio V, Shen Y, Saijo Y, Liu Y, Gusmaroli G, Dinesh-Kumar SP, and Deng XW. (2005) An alternative tandem affinity purification strategy applied to Arabidopsis protein complex isolation. Plant J. 41:767-778. [Abstract]
Seay M, Dinesh-Kumar SP, and Levine B. (2005) Digesting oneself and digesting microbes: autophagy as a host response to viral infection. “Modulation of host gene expression and of innate immunity by viruses” Ed. P. Palese. Springer, Life Sciences, Biomedical. 245-279.
Popescu SC, Popescu G.V, Bachan S, Zhang Z, Gerstein M, Snyder M, and Dinesh-Kumar SP. (2009) MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Genes Dev 23:80-92. [Abstract]
Popescu SC, Popescu GV, Snyder M, and Dinesh-Kumar SP. (2009) Integrated analysis of co-expressed MAP kinase substrates in Arabidopsis thaliana. Plant Signal Behavior 4, 524-527. [Abstract]
*Hayward A, Tsao J, (contributed equally), and Dinesh-Kumar SP. (2009) Autophagy and plant innate immunity: Defense through degradation. Semin Cell Dev Biol 20, 1041-1047. (cover review). [Abstract]
Seay M, Hayward A, Tsao J, and Dinesh-Kumar SP. (2009) Something old, something new: Plant innate immunity and autophagy. Curr Top Microbiol Immunol 335:287-306. [Abstract]
Padmanabhan M and Dinesh-Kumar SP. (2009) Virus induced gene silencing as a tool for delivery of dsRNA into plants. Cold Spring Harb Protoc. Feb;2009(2):pdb.prot5139. [Abstract]
Padmanabhan M, Cournoyer P, and Dinesh-Kumar SP. (2009) The Leucine Rich Repeat Domain in Plant Innate Immunity: A Wealth of Possibilities. Cell Microbiol 11:191-198. [Abstract]
Zhu X and Dinesh-Kumar SP. (2009) Virus induced gene silencing (VIGS) to study gene function in plants. RNA Interference: Methods for Plants & Animals, Ed. T. Doran and C. Helliwell, CABI Publishing, pp 26-49.
Caplan JC, Mamillapalli P, Burch-Smith TM, Czymmek K, and Dinesh-Kumar SP. (2008)Chloroplastic protein NRIP1 mediates innate immune receptor recognition of a viral effector. Cell 132:449-462. [Abstract]
Caplan JC, Padmanabhan M, and Dinesh-Kumar SP. (2008) Plant NB-LRR immune receptors: From recognition to transcriptional reprogramming. Cell Host Microbe 3:126-135. [Abstract]
Patel S and Dinesh-Kumar SP. (2008) Arabidopsis ATG6 is required to limit the pathogen-associated cell death response. Autophagy 4:20-27. [Abstract]
Klionsky DJ, et al., (2008) Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes. Autophagy 4:151-175. [Abstract]
Zhu X, and Dinesh-Kumar SP. (2008) Virus induced gene silencing as a tool to identify host genes affecting viral pathogenicity. Methods Mol Biol 451, 641-648. [Abstract]
Gong W, He K, Covington M, Dinesh-Kumar SP, Snyder M, Harmer SL, Zhu YX, and Deng XW. (2008) The Development of Protein Microarrays and Their Applications in DNA–Protein and Protein–Protein Interaction Analyses of Arabidopsis Transcription Factors. Mol Plant 1:27-41. [Abstract]
Burch-SmithTM, Schiff M, Caplan J, Tsao J, Czymmek K, and Dinesh-Kumar SP. (2007) A novel role for the TIR domain in association with pathogen-derived elicitors. PLoS Biol 5 (3):e68:501-514. [Abstract]
Burch-Smith TM and Dinesh-Kumar SP. (2007) The functions of plant TIR domains. Science STKE 401:pe46. [Abstract]
Seay M and Dinesh-Kumar SP. (2007) Autophagy takes its TOLL on innate immunity. Cell Host Microbe 2:69-70. [Abstract]
Popescu SC, Snyder M, and Dinesh-Kumar SP. (2007) Arabidopsis protein microarrays for the high-throughput identification of protein-protein interactions. Plant Signal Behavior 2: Issue 5. [Abstract]
Bhattarai KK, Li Q, Liu Y, Dinesh-Kumar SP, and Kaloshian I. (2007) The Mi-1-Mediated Pest Resistance Requires Hsp90 and Sgt1. Plant Physiol 144:312-323. [Abstract]
Popescu SC, Popescu GV, Bachan S, Zhang Z, Seay M, Gerstein M, Snyder M, and Dinesh-Kumar SP. (2007) Differential binding of calmodulin related proteins to their targets revealed using high-density Arabidopsis protein microarrays. Proc Natl Acad Sci 104:4730-4735. [Abstract]
Dong Y, Burch-Smith T, Liu Y, Mamillapalli P, and Dinesh-Kumar SP. (2007) A ligation-independent cloning TRV vector for high-throughput virus induced gene silencing identifies roles for NbMADS4-1 and –2 in floral development. Plant Physiol 145:1161-1170. [Abstract]
*Burch-Smith TM, *Schiff M, *Liu Y, (*contributed equally) and Dinesh-Kumar SP. (2006) Efficient virus induced gene silencing in Arabidopsis thaliana. Plant Physiol 142:21-27. [Abstract]
Patel S, Caplan J, and Dinesh-Kumar SP. (2006) Autophagy in control of programmed cell death. Curr Opin Plant Biol 9:391-396. [Abstract]
*Seay M, *Patel S, (*contributed equally) and Dinesh-Kumar SP. (2006) Autophagy and plant innate immunity. Cell Microbiol 8:899-906. [Abstract]
Caplan J and Dinesh-Kumar SP. (2006) Using viral vectors to silence endogenous genes. Curr Protocols Microbiol I6I.6.1-I6I.6.13. [Abstract]
Caplan J and Dinesh-Kumar SP. (2006) Recognition and signal transduction associated with R gene-mediated resistance. “Natural Resistance Mechanisms of Plants to Viruses” Ed. G. Loebenstein and J. P. Carr. Kluwer Academic Publishers, Netherlands . pages 73-98.
*Miller J, *Burch-Smith T, (*contributed equally) and Dinesh-Kumar SP. (2006) Viral Resistance in Plants: Natural and Engineered. Handbook of Plant Virology Ed. Jawaid A. Khan and Jeanne Dijkstra, The Haworth Press, Inc. NY. Pages 221-234.
Seay M and Dinesh-Kumar SP. (2005) Life After Death: Are Autophagy Genes Involved in Cell Death and Survival During Plant Innate Immune Responses? Autophagy 1:185-186. [Abstract]
*Soosaar J, *Burch-Smith TM, (*contributed equally) and Dinesh-Kumar SP. (2005) Mechanisms of plant resistance to viruses. Nature Rev Microbiol 3:789-798. [Abstract]
Liu Y, Schiff M, Czymmek K, Talloczy Z, Levine B, and Dinesh-Kumar SP. (2005) Autophagy regulates programmed cell death during the plant innate immune response. Cell 121:567-577. [Abstract]
- See Preview in Developmental Cell 8:799-801; See Research Roundup in J Cell Biol 169:837.
Rubio V, Shen Y, Saijo Y, Liu Y, Gusmaroli G, Dinesh-Kumar SP, and Deng XW. (2005) An alternative tandem affinity purification strategy applied to Arabidopsis protein complex isolation. Plant J. 41:767-778. [Abstract]
Seay M, Dinesh-Kumar SP, and Levine B. (2005) Digesting oneself and digesting microbes: autophagy as a host response to viral infection. “Modulation of host gene expression and of innate immunity by viruses” Ed. P. Palese. Springer, Life Sciences, Biomedical. 245-279.
2000-2004
Marathe R, Guan Z, Anandalakshmi R, Zhao H, and Dinesh-Kumar SP. (2004) Study of Arabidopsis thaliana resistome in response to cucumber mosaic virus infection using whole genome microarray. Plant Mol Biol. 55:501-520. [Abstract]
*Liu Y, *Nakayama N, (*contributed equally), Schiff M, Litt A, Irish VF, and Dinesh-Kumar SP. (2004) Virus induced gene silencing of a DEFICIENS ortholog in Nicotiana benthamiana. Plant Mol Biol. 54:701-711. [Abstract]
*Burch-Smith TM, *Anderson JC, (*contributed equally), Martin GB, and Dinesh-Kumar SP. (2004) Applications and advantages of virus-induced gene silencing for gene function studies in plants. Plant J. 39:734-746. [Abstract]
Gong W, Shen YP, Ma LG, Pan Y, Du YL, Wang DH, Yang JY, Hu LD, Liu XF, Dong CX, Ma L, Chen YH, Yang XY, Gao Y, Zhu D, Tan X, Mu JY, Zhang DB, Liu YL, Dinesh-Kumar SP, Li Y, Wang XP, Gu HY, Qu LJ, Bai SN, Lu YT, Li JY, Zhao JD, Zuo J, Huang H, Deng XW, and Zhu YX. (2004) Genome-wide ORFeome cloning and analysis of Arabidopsis transcription factor genes. Plant Physiol. 135:773-782. [Abstract]
Liu Y, Schiff M, and Dinesh-Kumar SP. (2004) Involvement of MEK1 MAPKK, NTF6 MAPK, WRKY/MYB transcription factors, COI1 and CTR1 in N-mediated resistance to tobacco mosaic virus. Plant J. 38:800-809. [Abstract]
*Liu Y, *Burch-Smith T, (*contributed equally), Schiff M, Feng S, and Dinesh-Kumar SP. (2004) Molecular chaperone Hsp90 associates with resistance protein N and its signaling proteins SGT1 and Rar1 to modulate an innate immune response in plants. J Biol Chem. 279:2101-2108. Epub 2003 Oct 28. [Abstract]
Dinesh-Kumar SP, Marathe R, and Anandalakshim R. (2004) Virus induced gene silencing. “Encyclopedia of Plant and Crop Science” Ed. Robert M. Goodman, Marcel Dekker, Inc. NY. DOI/101081EEPCS120010638; pp1276-1279
Ekengren SK, Liu Y, Schiff M, Dinesh-Kumar SP, and Martin GB. (2003) Two MAPK cascades, NPR1, and TGA transcription factors play a role in Pto-mediated disease resistance in tomato. Plant J. 36:905-917. [Abstract]
Dinesh-Kumar SP, Anandalakshmi R, Marathe R, Schiff M, and Liu Y. (2003), Virus-induced gene silencing. Methods Mol Biol. 236:287-294. [Abstract]
Bilgin DD, Liu Y, Schiff M, and Dinesh-Kumar SP. (2003) P58IPK, a plant ortholog of double-stranded RNA-dependent protein kinase PKR inhibitor, functions in viral pathogenesis. Dev Cell. 4:651-661. [Abstract]
Feng S, Ma L, Wang X, Xie D, Dinesh-Kumar SP, Wei N, and Deng XW. (2003) The COP9 signalosome interacts physically with SCF COI1 and modulates jasmonate responses. Plant Cell 15:1083-1094. [Abstract]
*Burch-Smith, T., *Miller, J., (*contributed equally) and Dinesh-Kumar, S.P. (2003) PTGS Approaches to Large-Scale Functional Genomics in Plants. “RNAi: A guide to gene silencing ” Ed. Gregory Hannon, Cold Spring Harbor Laboratory press, NY, pp 243-263.
Marathe R and Dinesh-Kumar SP. (2003) Plant defense: one post, multiple guards?! Mol Cell. 11:284-286. [Abstract]
Takahashi H, Miller J, Nozaki Y, Takeda M, Shah J, Hase S, Ikegami M, Ehara Y, and Dinesh-Kumar SP. (2002) RCY1, an Arabidopsis thaliana RPP8/HRT family resistance gene, conferring resistance to cucumber mosaic virus requires salicylic acid, ethylene and a novel signal transduction mechanism. Plant J. 32:655-667. [Abstract]
Marathe R, Anandalakshmi R, Liu Y, and Dinesh-Kumar SP. (2002) The tobacco mosaic virus resistance gene, N. Mol Plant Pathol. 3:167-172. [Abstract]
Liu Y, Schiff M, and Dinesh-Kumar SP. (2002) Virus-induced gene silencing in tomato. Plant J. 31:777-686. [Abstract]
Liu Y, Schiff M, Serino G, Deng XW, and Dinesh-Kumar SP. (2002) Role of SCF ubiquitin-ligase and the COP9 signalosome in the N gene-mediated resistance response to Tobacco mosaic virus. Plant Cell. 14:1483-1496. [Abstract]
Liu Y, Schiff M, Marathe R, and Dinesh-Kumar SP. (2002) Tobacco Rar1, EDS1 and NPR1/NIM1 like genes are required for N-mediated resistance to tobacco mosaic virus. Plant J. 30:415-429. [Abstract]
Whitham SA and Dinesh-Kumar SP. (2002) Signaling in plant-virus interactions. “Plant Signal Transduction: Frontiers in Molecular Biology” Ed. Dierk Scheel and Claus Wasternack, Oxford University Press. 38:226-249.
Paul CP, Barry JK, Dinesh-Kumar SP, Brault V, and Miller WA. (2001) A sequence required for -1 ribosomal frameshifting located four kilobases downstream of the frameshift site. J Mol Biol. 310:987-999. [Abstract]
Dinesh-Kumar SP and Baker B. (2000). Alternatively spliced N resistance gene transcripts: Their possible role in tobacco mosaic virus resistance. Proc Natl Acad Sci. 97:1908-1913. [Abstract]
Dinesh-Kumar SP, Tham WH, and Baker B. (2000) Structure-function analysis of the tobacco mosaic virus resistance gene N. Proc Natl Acad Sci 97:14789-14794. [Abstract]
*Liu Y, *Nakayama N, (*contributed equally), Schiff M, Litt A, Irish VF, and Dinesh-Kumar SP. (2004) Virus induced gene silencing of a DEFICIENS ortholog in Nicotiana benthamiana. Plant Mol Biol. 54:701-711. [Abstract]
*Burch-Smith TM, *Anderson JC, (*contributed equally), Martin GB, and Dinesh-Kumar SP. (2004) Applications and advantages of virus-induced gene silencing for gene function studies in plants. Plant J. 39:734-746. [Abstract]
Gong W, Shen YP, Ma LG, Pan Y, Du YL, Wang DH, Yang JY, Hu LD, Liu XF, Dong CX, Ma L, Chen YH, Yang XY, Gao Y, Zhu D, Tan X, Mu JY, Zhang DB, Liu YL, Dinesh-Kumar SP, Li Y, Wang XP, Gu HY, Qu LJ, Bai SN, Lu YT, Li JY, Zhao JD, Zuo J, Huang H, Deng XW, and Zhu YX. (2004) Genome-wide ORFeome cloning and analysis of Arabidopsis transcription factor genes. Plant Physiol. 135:773-782. [Abstract]
Liu Y, Schiff M, and Dinesh-Kumar SP. (2004) Involvement of MEK1 MAPKK, NTF6 MAPK, WRKY/MYB transcription factors, COI1 and CTR1 in N-mediated resistance to tobacco mosaic virus. Plant J. 38:800-809. [Abstract]
*Liu Y, *Burch-Smith T, (*contributed equally), Schiff M, Feng S, and Dinesh-Kumar SP. (2004) Molecular chaperone Hsp90 associates with resistance protein N and its signaling proteins SGT1 and Rar1 to modulate an innate immune response in plants. J Biol Chem. 279:2101-2108. Epub 2003 Oct 28. [Abstract]
Dinesh-Kumar SP, Marathe R, and Anandalakshim R. (2004) Virus induced gene silencing. “Encyclopedia of Plant and Crop Science” Ed. Robert M. Goodman, Marcel Dekker, Inc. NY. DOI/101081EEPCS120010638; pp1276-1279
Ekengren SK, Liu Y, Schiff M, Dinesh-Kumar SP, and Martin GB. (2003) Two MAPK cascades, NPR1, and TGA transcription factors play a role in Pto-mediated disease resistance in tomato. Plant J. 36:905-917. [Abstract]
Dinesh-Kumar SP, Anandalakshmi R, Marathe R, Schiff M, and Liu Y. (2003), Virus-induced gene silencing. Methods Mol Biol. 236:287-294. [Abstract]
Bilgin DD, Liu Y, Schiff M, and Dinesh-Kumar SP. (2003) P58IPK, a plant ortholog of double-stranded RNA-dependent protein kinase PKR inhibitor, functions in viral pathogenesis. Dev Cell. 4:651-661. [Abstract]
Feng S, Ma L, Wang X, Xie D, Dinesh-Kumar SP, Wei N, and Deng XW. (2003) The COP9 signalosome interacts physically with SCF COI1 and modulates jasmonate responses. Plant Cell 15:1083-1094. [Abstract]
*Burch-Smith, T., *Miller, J., (*contributed equally) and Dinesh-Kumar, S.P. (2003) PTGS Approaches to Large-Scale Functional Genomics in Plants. “RNAi: A guide to gene silencing ” Ed. Gregory Hannon, Cold Spring Harbor Laboratory press, NY, pp 243-263.
Marathe R and Dinesh-Kumar SP. (2003) Plant defense: one post, multiple guards?! Mol Cell. 11:284-286. [Abstract]
Takahashi H, Miller J, Nozaki Y, Takeda M, Shah J, Hase S, Ikegami M, Ehara Y, and Dinesh-Kumar SP. (2002) RCY1, an Arabidopsis thaliana RPP8/HRT family resistance gene, conferring resistance to cucumber mosaic virus requires salicylic acid, ethylene and a novel signal transduction mechanism. Plant J. 32:655-667. [Abstract]
Marathe R, Anandalakshmi R, Liu Y, and Dinesh-Kumar SP. (2002) The tobacco mosaic virus resistance gene, N. Mol Plant Pathol. 3:167-172. [Abstract]
Liu Y, Schiff M, and Dinesh-Kumar SP. (2002) Virus-induced gene silencing in tomato. Plant J. 31:777-686. [Abstract]
Liu Y, Schiff M, Serino G, Deng XW, and Dinesh-Kumar SP. (2002) Role of SCF ubiquitin-ligase and the COP9 signalosome in the N gene-mediated resistance response to Tobacco mosaic virus. Plant Cell. 14:1483-1496. [Abstract]
Liu Y, Schiff M, Marathe R, and Dinesh-Kumar SP. (2002) Tobacco Rar1, EDS1 and NPR1/NIM1 like genes are required for N-mediated resistance to tobacco mosaic virus. Plant J. 30:415-429. [Abstract]
Whitham SA and Dinesh-Kumar SP. (2002) Signaling in plant-virus interactions. “Plant Signal Transduction: Frontiers in Molecular Biology” Ed. Dierk Scheel and Claus Wasternack, Oxford University Press. 38:226-249.
Paul CP, Barry JK, Dinesh-Kumar SP, Brault V, and Miller WA. (2001) A sequence required for -1 ribosomal frameshifting located four kilobases downstream of the frameshift site. J Mol Biol. 310:987-999. [Abstract]
Dinesh-Kumar SP and Baker B. (2000). Alternatively spliced N resistance gene transcripts: Their possible role in tobacco mosaic virus resistance. Proc Natl Acad Sci. 97:1908-1913. [Abstract]
Dinesh-Kumar SP, Tham WH, and Baker B. (2000) Structure-function analysis of the tobacco mosaic virus resistance gene N. Proc Natl Acad Sci 97:14789-14794. [Abstract]
1987 - 1999
Erickson FL, Dinesh-Kumar SP, Holzberg S, Ustach CV, Dutton M, Handley V, Corr C, and Baker B. (1999). Interactions between tobacco mosaic virus and the tobacco N gene. Philosophical Transactions Royal Society of London, Biological Sciences, 354:653-658. [Abstract]
Koev G, Mohan BR, Dinesh-Kumar SP, Torbert KA, Somers DA, and Miller WA. (1998). Extreme reduction of disease in oats transformed with the 5’ half of the barley yellow dwarf virus-PAV genome. Phytopathol. 88:1013-1019. [Abstract]
Baker B, Zambryski P, Staskawicz B, and Dinesh-Kumar SP. (1997). Signaling in plant-microbe interactions. Science 276:726-733. [Abstract]
Brown CM, Dinesh-Kumar SP, and Miller WA. (1996). Local and distant sequences are required for efficient readthrough of the barley yellow dwarf virus PAV coat protein gene stop codon. J Virol. 70:5884-5892. [Abstract]
Chay CA, Gunasinge UB, Dinesh-Kumar SP, Miller WA, and Gray SM. (1996). Aphid transmission and systemic plant infection determinants of barley yellow dwarf luteovirus-PAV are contained in the coat protein readthrough domain and 17-kDa protein respectively. Virology 219:57-65. [Abstract]
Dinesh-Kumar SP, Whitham S, Choi D, Hehl R, Corr C, and Baker B. (1995). Transposon tagging of tobacco mosaic virus resistance gene N:its possible role in the TMV-N-mediated signal transduction pathway. Proc. Natl Acad Sci. 92:4175-80. [Abstract]
Thatiparthi VR, Dinesh-Kumar SP, and Peterson PA. (1995). Permanent fixation of a transposable element insert in the A2 gene of maize (Zea mays L.). J Heredity. 86:167-71. [Abstract]
Mohan BR, Dinesh-Kumar SP, and Miller, WA. (1995). Genes and cis-acting sequences involved in replication of barley yellow dwarf virus-PAV RNA. Virology 212:186-95. [Abstract]
Miller WA, Dinesh-Kumar SP, and Paul CP. (1995). Luteovirus gene expression. CRC Rev Plant Sci. 4:179-211.
Silver SL, Rasochova L, Dinesh-Kumar SP, and Miller WA. (1995). Self cleavage and replication of barley yellow dwarf virus satellite RNA. In "Biotechnology and Plant Protection: Viral Pathogenesis and Disease Resistance. Proceedings of the Fifth International Symposium, 19-21 October 1992. (Bills, D.D. and Kung, S.-D. eds) World Scientific Publishing, Singapore pp. 231-241.
Whitham S, Dinesh-Kumar SP, Choi D, Hehl R, Corr C, and Baker B. (1994). The product of the tobacco mosaic virus resistance gene N: Similarity to Toll and the interleukin-1 receptor. Cell 78: 1101-1115. [Abstract]
Baker B, Dinesh-Kumar SP, Choi D, Hehl R, Corr C, and Whitham, S. (1994). Isolation of the tobacco mosaic virus resistance gene N. Advances in Molecular Genetics of Plant-Microbe Interactions, Vol. 3. (M. J. Daniels, J. A. Downie and A. E. Osbourn eds.,) pp 297-302.
Silver SL, Rasochova L, Dinesh-Kumar SP, and Miller WA. (1994). Replication of barley yellow dwarf virus satellite RNA transcripts in Oat protoplasts. Virology 198:331-335. [Abstract]
Dinesh-Kumar SP and Miller WA. (1993). Control of start codon choice on a plant viral RNA encoding overlapping genes. Plant Cell 5: 679-692. [Abstract]
Di R, Dinesh-Kumar SP, and Miller WA. (1993). Translational frameshifting by barley yellow dwarf virus RNA (PAV serotype) in Escherichia coli and in eukaryotic cell-free extracts. Mol Plant Microbe Interact 6:444-452. [Abstract]
Dinesh-Kumar SP, Brault V, and Miller WA. (1992). Precise mapping and in vitro translation of a trifunctional subgenomic RNA of barley yellow dwarf virus. Virology 187: 711-722. [Abstract]
Dinesh-Kumar SP, Sashidhar VR, Ravikumar RL, Seetharam A, and Gowda BTS. (1992). Identification of true genetic dwarfing sources in foxtail millet (Setaria italica). Euphytica 60:207-212.
Ravikumar RL, Dinesh-Kumar SP, and Seetharam A. (1991). Association of seed color with seed protein, phenol, tannin and blast susceptibility in finger millet (Eleusine coracana). SABRAO J. 23:91-94.
Dinesh-Kumar SP, Sashidhar VR, Prasad TG, Udaya Kumar M, and Seetharam A. (1987). Solute accumulation, solute potential, germinability and seedling vigor of seeds of finger millet (Eleusine coracana) raised under rain-fed conditions and under irrigation. Plant, Cell Environ 10:661-665.
Koev G, Mohan BR, Dinesh-Kumar SP, Torbert KA, Somers DA, and Miller WA. (1998). Extreme reduction of disease in oats transformed with the 5’ half of the barley yellow dwarf virus-PAV genome. Phytopathol. 88:1013-1019. [Abstract]
Baker B, Zambryski P, Staskawicz B, and Dinesh-Kumar SP. (1997). Signaling in plant-microbe interactions. Science 276:726-733. [Abstract]
Brown CM, Dinesh-Kumar SP, and Miller WA. (1996). Local and distant sequences are required for efficient readthrough of the barley yellow dwarf virus PAV coat protein gene stop codon. J Virol. 70:5884-5892. [Abstract]
Chay CA, Gunasinge UB, Dinesh-Kumar SP, Miller WA, and Gray SM. (1996). Aphid transmission and systemic plant infection determinants of barley yellow dwarf luteovirus-PAV are contained in the coat protein readthrough domain and 17-kDa protein respectively. Virology 219:57-65. [Abstract]
Dinesh-Kumar SP, Whitham S, Choi D, Hehl R, Corr C, and Baker B. (1995). Transposon tagging of tobacco mosaic virus resistance gene N:its possible role in the TMV-N-mediated signal transduction pathway. Proc. Natl Acad Sci. 92:4175-80. [Abstract]
Thatiparthi VR, Dinesh-Kumar SP, and Peterson PA. (1995). Permanent fixation of a transposable element insert in the A2 gene of maize (Zea mays L.). J Heredity. 86:167-71. [Abstract]
Mohan BR, Dinesh-Kumar SP, and Miller, WA. (1995). Genes and cis-acting sequences involved in replication of barley yellow dwarf virus-PAV RNA. Virology 212:186-95. [Abstract]
Miller WA, Dinesh-Kumar SP, and Paul CP. (1995). Luteovirus gene expression. CRC Rev Plant Sci. 4:179-211.
Silver SL, Rasochova L, Dinesh-Kumar SP, and Miller WA. (1995). Self cleavage and replication of barley yellow dwarf virus satellite RNA. In "Biotechnology and Plant Protection: Viral Pathogenesis and Disease Resistance. Proceedings of the Fifth International Symposium, 19-21 October 1992. (Bills, D.D. and Kung, S.-D. eds) World Scientific Publishing, Singapore pp. 231-241.
Whitham S, Dinesh-Kumar SP, Choi D, Hehl R, Corr C, and Baker B. (1994). The product of the tobacco mosaic virus resistance gene N: Similarity to Toll and the interleukin-1 receptor. Cell 78: 1101-1115. [Abstract]
Baker B, Dinesh-Kumar SP, Choi D, Hehl R, Corr C, and Whitham, S. (1994). Isolation of the tobacco mosaic virus resistance gene N. Advances in Molecular Genetics of Plant-Microbe Interactions, Vol. 3. (M. J. Daniels, J. A. Downie and A. E. Osbourn eds.,) pp 297-302.
Silver SL, Rasochova L, Dinesh-Kumar SP, and Miller WA. (1994). Replication of barley yellow dwarf virus satellite RNA transcripts in Oat protoplasts. Virology 198:331-335. [Abstract]
Dinesh-Kumar SP and Miller WA. (1993). Control of start codon choice on a plant viral RNA encoding overlapping genes. Plant Cell 5: 679-692. [Abstract]
Di R, Dinesh-Kumar SP, and Miller WA. (1993). Translational frameshifting by barley yellow dwarf virus RNA (PAV serotype) in Escherichia coli and in eukaryotic cell-free extracts. Mol Plant Microbe Interact 6:444-452. [Abstract]
Dinesh-Kumar SP, Brault V, and Miller WA. (1992). Precise mapping and in vitro translation of a trifunctional subgenomic RNA of barley yellow dwarf virus. Virology 187: 711-722. [Abstract]
Dinesh-Kumar SP, Sashidhar VR, Ravikumar RL, Seetharam A, and Gowda BTS. (1992). Identification of true genetic dwarfing sources in foxtail millet (Setaria italica). Euphytica 60:207-212.
Ravikumar RL, Dinesh-Kumar SP, and Seetharam A. (1991). Association of seed color with seed protein, phenol, tannin and blast susceptibility in finger millet (Eleusine coracana). SABRAO J. 23:91-94.
Dinesh-Kumar SP, Sashidhar VR, Prasad TG, Udaya Kumar M, and Seetharam A. (1987). Solute accumulation, solute potential, germinability and seedling vigor of seeds of finger millet (Eleusine coracana) raised under rain-fed conditions and under irrigation. Plant, Cell Environ 10:661-665.