Publications

Van Harreveld, A., T.M. Murphy and K. Nobel.  1963.  Specific impedance of rabbit's cortical tissue.  American Journal of Physiology 205:203-207.

Murphy, T.M. and S.E. Mills. 1965. An antigenic comparison of tryptophan synthetase derived from various strains of Neurospora crassa.  Biochemical and Biophysical Research Communications 18:843-849.

Murphy, T.M. 1968.  Patterns of Surface Structure Variation in Tryptophan Synthetase a-subunit.  Ph.D. Dissertation, University of California at San Diego, La Jolla, California.

Murphy, T.M. and S.E. Mills. 1968.  Immunochemical comparisons of mutant and wild-type a-subunits of tryptophan synthetase.  Archives of Biochemistry and Biphysics 127:7-16.

Murphy, T.M. and S.E. Mills. 1969. Immunochemical and enzymatic comparisons of the tryptophan synthetase a-subunits from five species of Enterobacteriaceae.  Journal of Bacteriology 97:1310-1320.

Murphy, T.M. and S.E. Mills.  1969.  Different specificities in antisera prepared against Escherichia coli tryptophan synthetase a-subunit.  Journal of Immunology 103:1377-1384.

Murphy, T.M., A. Kahn and A. Lang. 1970. Stabilization of the polarity axis in the zygotes of some Fucaceae.  Planta 90:97-108.

Grouse, L., T.M. Murphy, M.P. Gordon, and E.A. Smuckler. 1970. The photobiology of a spherical phenotypic hybrid of tobacco mosaic virus.  Virology 41:385-388.

Murphy, T.M. and M.P. Gordon. 1971. Light-mediated regulation of TMV-RNA photoreactivation.  Photochemistry and Photobiology 13:45-55.

Murphy, T.M. and M.P. Gordon. 1971. Ultraviolet irradiation of tobacco leaves:  inhibition of tobacco mosaic virus-ribonucleic acid photoreactivation.  Photochemistry and Photobiology 14:721-773.

Murphy, T.M., D.N. Kuhn and J.B. Murphy. 1973. Ultraviolet irradiation of the components of the wheat embryo in vitro protein synthesizing system.  Biochemistry 12:1782-1789.

Murphy, T.M. 1973. Inactivation of TMV-RNA by ultra-violet radiation in sunlight.  International Journal of Radiation Biology 23:519-526.

Diner, J. and T.M. Murphy. 1973. Ultraviolet irradiation:  Does RNA photoreactivation protect the leaf?  Photochemistry and Photobiology 18:429-433.

Murphy, T.M., L.A. Wright, Jr. and J.B. Murphy.  1975.  Inhibition of protein synthesis in cultured tobacco cells by ultraviolet radiation.  Photochemistry and Photobiology 21:219-225.

Peters, D.L. and T.M. Murphy. 1975. Selection of temperature-sensitive mutants of tobacco mosaic virus by lesion morphology.  Virology 65:595-600.

Murphy, T.M. 1975. Nucleic acids:  Interaction with solar UV radiation.  Current Topics in Radiation Research Quarterly 10:199-228.

Murphy, T.M. 1975. Inactivation of tobacco mosaic virus ribonucleic acid by near- and middle-ultraviolet light:  Sensitization by sulfanilamide and chlortetracycline.  Biochemical and Biophysical Research Communications 65:1108-1114.

Murphy, T.M. 1975. Effects of UV radiation on nucleic acids. In:  Impacts of Climatic Change on the Biosphere.  Monograph 5, 29 pp., Climatic Impact Assessment Program, Dept. of Transportation, Washington, DC.

Wright, L.A., Jr. and T.M. Murphy. 1975. Photoreactivation of nitrate reductase production in Nicotiana tabacum var. xanthi.  Biochemica et Biophysica Acta 407:338-346.

Murphy, T.M. 1978. Immunochemical comparisons of ribulosebisphosphate carboxylases using antisera to tobacco and spinach enzymes.  Phytochemistry 17:439-443.

Wright, L.A., Jr. and T.M. Murphy. 1978. Ultraviolet radiation-stimulated efflux of 86Rubidium from cultured tobacco cells.  Plant Physiology 61:434-436.

Rost, T.L., K.E. Paterson and T.M. Murphy.  1978. Densitometric analysis of double label autoradiographs.  Mikroskopie (Wien) 33:209-224.

Ilker, R.A., R.W. Breidenbach and T.M. Murphy. 1979. Partial purification of actin from wheat germ.  Phytochemistry 18:1781-1783.

Schwartzkopf, S. and T.M. Murphy. 1979. Independent Investigations in Introductory Biology.  Burgess Publishing Co., Minneapolis, MN.  95 pp.

Murphy, T.M., C.M. Hamilton and H.E. Street. 1979. A strain of Rosa damascena cultured cells resistant to ultraviolet light.  Plant Physiology 64:936-941.

Murphy, T.M. and M.P. Gordon. 1981. Photobiology of RNA viruses.  In:  Comprehensive Virology (H. Fraenkel-Conrat and R.R. Wagner, eds.), Chap. 6, pp. 285-351, Plenum Press Corp., NY.

Schwartzkopf, S., T.M. Murphy and S. Black. 1981.  Independent Investigations in Introductory Biology, 2nd edn.  Burgess Publishing Co., Minneapolis, MN.  103 pp.

Wright, L.A., Jr., R.L. Travis and T.M. Murphy. 1981. The effect of ultraviolet radiation on wheat root vesicles enriched in plasma membrane.  Photochemistry and Photobiology 33:343-348.

Murphy, T.M. 1981. Immunochemical comparisons of seed proteins from populations of Pinus radiata (Pinaceae).  American Journal of Botany 68:254-259.

Murphy, T.M. 1981. Comparing seed proteins from Pinus radiata populations.  BioScience 31:146-147.

Murphy, T.M. and C.W. Imbrie. 1981. Induction and characterization of chlorate-resistant strains of Rosa damascena cultured cells.  Plant Physiology 67:910-916.

Murphy, T.M. 1982. Analysis of distributions of mutants in clones of plant cell aggregates.  Theoretical and Applied Genetics 61:367-372.

Wright, L.A., Jr. and T.M. Murphy. 1982. Shortwave ultraviolet light closes leaf stomata.  American Journal of Botany 69:1196-1199.

Murphy, T.M. and C. Wilson. 1982. The UV-stimulated K+ efflux from rose cells.  Plant Physiology 70:709-713.

Imbrie, C.W. and T.M. Murphy. 1982. UV-action spectrum (254-405 nm) for inhibition of a K+-stimulated adenosine triphosphatase from the plasma membrane of Rosa damascena.  Photochemistry and Photobiology 36:537-542.

Schwartzkopf, S., T.M. Murphy and S. Black. 1982. Independent Investigations in Introductory Biology, 3rd edn.  Burgess Publishing Co., Minneapolis, MN.  105 pp.

Portnoy, S. and T.M. Murphy. 1983. Distribution of mutants in aggregates of cultured cells.  Theoretical Population Biology 23:136-146.

Murphy, T.M. 1983. Membranes as targets of ultraviolet radiation.  Physiologia Plantarum 58:381-388.

Murphy, T.M., G.B. Matson and S.L. Morrison. 1983.  Ultraviolet-stimulated KHCO3 efflux from rose cells:  regulation of cytoplasmic pH.  Plant Physiology 73:20-24.

Imbrie, C. W. and T. M. Murphy. 1984. Solubilization and partial purification of two adenosine triphosphatases from a rose cell plasma membrane fraction.  Plant Physiology 74:611-616. 

Imbrie, C. W. and T. M. Murphy. 1984. Photoinactivation of two detergent solubilized plasma membrane ATPase from Rosa damascena:  action spectra.  Plant Physiology 74:617-621.

Murphy, T. M. 1984. The effect of sulfhydryl reagents on K+ efflux from rose cells:  relationship to UV-stimulated efflux.  Plant Physiology 75:138-141.

Imbrie, C. W. and T. M. Murphy. 1984. Mechanism of photoinactivation of plant plasma membrane ATPase.  Photochemistry and Photobiology 40:243-248.

Imbrie, C. W. and T. M. Murphy. 1984. Proton pumping by vesicles reconstituted from two fractions of solubilized rose-cell plasma membrane ATPase.  Biochimica et Biophysica Acta 778:229-232. 

Murphy, T. M., A. F. Wrona and K. Wycoff. 1985. Chlorate-resistant rose cells:  influx, efflux and reduction of [36Cl]-chlorate.  Physiologia Plantarum 64:339-344.

Björn, L. O. and T. M. Murphy. 1985. Computer calculation of solar ultraviolet radiation at ground level.  Physiologie Vegetale 23:555-561.

Murphy, T. M., H. C. Hurrell and T. L. Sasaki. 1985.  Wavelength dependence of ultraviolet radiation-induced mortality and K+ efflux in cultured cells of Rosa damascena. Photochemistry and Photobiology 42:281-286. 

Murphy, T. M., S. Widell and J. Hellergren. 1986. On the use of phase partition to isolate vacuoles from cultured cells.  Journal of Plant Cell, Tissue, and Organ Culture 7:205-216.

Murphy, T. M. and W.F. Thompson. 1988.  Molecular Plant Development.  Prentice-Hall, Inc., Englewood Cliffs, NJ.

Murphy, T.M. 1988. Induced K+ efflux from cultured rose cells:  effects of protein-synthesis inhibitors.  Plant Physiology 86:830-835.

Murphy, T.M. 1988. Ca2+ dependence and La3+ interference of ultraviolet radiation-induced K+ efflux from rose cells.  Physiologia Plantarum 74:537-543.

Huerta, A.J. and T.M. Murphy. 1989. Effects of extracellular pH on UV-induced K+ efflux from cultured rose cells.  Plant Physiology 90:749-753.

Huerta, A.J. and T.M. Murphy. 1989. Control of intracellular glutathione and its effect on ultraviolet radiation-induced K+ efflux in cultured rose cells.  Plant, Cell and Environment 12:825-830. 

Huerta, A.J. and T.M. Murphy. 1989. The kinetics of efflux of K+ from cultured rose cells treated with ultraviolet light.  Physiologia Plantarum 77:525-530.

Murphy, T.M. and A.J. Huerta. 1990. Stress-induced efflux of K+ ion:  environmental control. In:  Growth and Differentiation in Plants (K.K. Dhir, ed.).  Nat'l Symp. on Regulation of Growth and Differentiation in Plants.  Chandigarh, India, 21-23 March 1988.

Murphy, T.M. and A.J. Huerta. 1990. Hydrogen peroxide formation in cultured rose cells treated with ultraviolet light.  Physiologia Plantarum 78:247-253.

Murphy, T.M. 1990. Effect of broad-band ultraviolet and visible radiation on hydrogen peroxide formation by cultured rose cells.  Physiologia Plantarum 80:63-68. 

Arnott, T. and T.M. Murphy. 1991. A comparison of the effects of a fungal elicitor and ultraviolet radiation on ion transport and hydrogen peroxide synthesis by rose cells.  Environmental and Experimental Botany 31:209-216.

Murphy, T.M., D. Canington, and D. Walker. 1992.  Herbivory, predation and biological control.  The American Biology Teacher 54:416-419.

Murphy, T.M. and C.K. Auh. 1992. Phytophthora elicitor inhibits ferricyanide reduction by cultured rose cells.  Environmental and Experimental Botany 32:487-496.

Murphy, T.M., I. Raskin, and A.J. Enyedi. 1993. Plasma membrane effects of salicylic acid treatment on cultured rose cells.  Environmental and Experimental Botany 33:267-272.

Murphy, T.M., Y.C. Qian, C.K. Auh, and C. Verhoeven. 1993.  UV-induced events at plant plasma membranes.  In: Frontiers of Photobiology  (A. Shima, M. Ichahashi, Y. Fujiwara, and H. Takebe, eds), pp. 555-560.  Elsevier Science Publishers B.V., Amsterdam.

Murphy, T.M., C.P. Martin, and J. Kami. 1993. Endonuclease activity from tobacco nuclei specific for ultraviolet radiation-damaged DNA.  Physiologia Plantarum 87:417-425.

Qian, Y.C. and T.M. Murphy. 1993. Regulation of rose cell plasma membrane ATPase activity by glutathione.  Plant Physiology and Biochemistry 31:901-909.

Qian, Y.C., T. Nguyen, and T.M. Murphy. 1993. Effects of washing on the plasma membrane and on stress reactions of cultured rose cells.  Plant, Cell, Tissue and Organ Culture 35:245-252.

Murphy, T.M. and J.M. Utts. 1994.  A retrospective analysis of peer review at Physiologia Plantarum.  Physiologia Plantarum 92:535-542.

Grobe, C.W. and T.M. Murphy.  1994 . Inhibition of growth of Ulva expansa (Chlorophyta) by ultraviolet-B.  Journal of Phycology 30:783-790.

Auh, C.-K. and T.M. Murphy. 1995. Plasma membrane redox enzyme is involved in the synthesis of O2- and H2O2 by Phytophthora elicitor-stimulated rose cells.  Plant Physiology 107:1241-1427.

Benes, S., T.M. Murphy, P.D. Anderson, and J.L.J. Houpis. 1995. Relationship of antioxidant enzymes to ozone tolerance in branches of mature ponderosa pine (Pinus ponderosa) trees exposed to long-term, low concentration, ozone fumigation and acid precipitation.  Physiologia Plantarum 94:124-134.

Murphy, T.M. and C.-K. Auh. 1996. The superoxide synthases of rose cell plasma membrane.  Plant Physiology 110:621-629.

Murphy, T.M. and H.D. Vu.  1996.  Photoinactivation of superoxide synthases of the plasma membrane from rose (Rosa damascena Mill.) cells.  Photochem. Photobiol. 64:106-109.

Hu, P. and T.M. Murphy.  1996.  Ferricyanide reductase of rose plasma membranes is regulated by nitrogen supply.  Plant Cell Reports 15:833-835.

Murphy, T.M.  1997.  Resistance of plants to the effects of ultraviolet radiation.  In:  Mechanisms of Environmental Stress Resistance in Plants.  A.S. Basra and R.K. Basra, eds. pp. 151-190.  Harwood Academic Publishers, Amsterdam.

Grobe, C.W. and T.M. Murphy.  1997.  Artificial ultraviolet-B radiation and cell expansion in the intertidal alga Ulva expansa (Chlorophyta).  Journal of Experimental Marine Biology and Ecology 217:209-223.

Rost, T.R., M.G. Barbour, C.R. Stocking and T.M. Murphy.  1998.  Plant Biology.  Wadsworth Publishing Co., Belmont, CA.

Grobe, C.W. and T.M. Murphy.  1998.  Solar ultraviolet-B radiation effects on growth and pigment composition of the intertidal alga Ulva expansa (Setch.) S.&G. (Chlorophyta).  Journal of Experimental Marine Biology and Ecology 225:39-51.

Bolwell, G.P., D.R. Davies, C. Gerrish, C-K. Auh and T.M. Murphy.   1998.  Comparative biochemistry of the oxidative burst produced by rose and french bean cells reveals two distinct mechanisms.  Plant Physiology  116:1379-1385.

Murphy, T.M., H.D. Vu and T. Nguyen.  1998.  The superoxide synthases of rose cells:  comparison of assays.  Plant Physiology 117:1301-1305.

Murphy, T.M., H. Asard and A.R. Cross.  1998.  Possible sources of reactive oxygen during the oxidative burst in plants.  In:  Plasma Membrane Redox Systems and their role in Biological Stress and Disease.  H. Asard and A. Berczi, eds.  pp. 215-246.  Kluwer Academic Publishers, Dordrecht.

Murphy, T.M. and M.-J. Gao.  1998.  Two cDNAs (Accession Nos. AF099970 and AF099971) encoding Arabidopsis thaliana homologs of bacterial formamidopyrimidine-DNA glycosylase genes are produced by alternative processing.  Plant Physiology 118:1535.

Okubara, P.A., K. Pawlowski, T.M. Murphy and A.M. Berry.  1999.  Symbiotic root nodules of the actinorhizal plant Datisca glomerata  express rubisco activase mRNA.  Plant Physiology 120:411-420.

Murphy, T.M., H.D. Vu, T. Nguyen and C.H. Woo.  2000.  Diphenylene iodonium sensitivity of a solubilized membrane enzyme from rose cells.  Protoplasma 213:228-234.

Gao, M.-J. and T.M. Murphy.  2001.  Alternative forms of formamidopyrimidine-DNA glycosylase from Arabidopsis thaliana.  Photochemistry and Photobiology 73:128-134.

Murphy, T.M. and M.-J. Gao.  2001. Multiple forms of formamidopyrimidine-DNA glycosylase produced by alternative splicing in Arabidopsis thaliana.  Journal of Photochemistry and Photobiology B. Biology 61:87-93.

Murphy, T.M. and V. Cross.  2002.  Should students get the instructor's lecture notes?  Journal of Biological Education 36:72-75.

Yu, C.-W., T.M. Murphy, W.-W. Sung, and C.-H Lin.  2002. H2O2 treatment induces glutathione accumulation and chilling tolerance in mung bean.  Functional Plant Biology 29:1-7.

Yu, C.-W., T.M. Murphy, and C.-H Lin.  2003. Hydrogen peroxide-induced chilling tolerance in mung beans mediated through ABA-independent glutathione accumulation.  Functional Plant Biology 30:955-963.

Murphy, T.M.  2003.  Cell culture and secondary metabolites.  In:  Encyclopedia of Rose Science  (A. Roberts, S. Gudin, T. Debener, eds.)  Academic Press, London.

Berry, A.M., T.M. Murphy, P.A. Okubara,  K.R. Jacobsen,  S. Swensen and K. Pawlowski.  2004.  Novel expression pattern of cytosolic glutamine synthetase in nitrogen-fixing root nodules of the actinorhizal host, Datisca glomerata.  Plant Physiology 135:1849-1862.

Krasnow MN, Murphy TM  2004.  Polyphenol glucosylating activity in cell suspensions of grape (Vitis vinifera) Journal of Agricultural And Food Chemistry 52:3467-3472.

Murphy, T.M.  2005.  What's base excision repair good for?:  Knockout mutants for FPG and OGG glycosylase genes in Arabidopsis.  Physiologia Plantarum 123:227-232.

Murphy, T.M., George A.  2005.  A comparison of two DNA base excision repair glycosylases from Arabidopsis thaliana.  Biochemical and Biophysical Research Communications 329:869-872.

Rost, T.R., M.G. Barbour, C.R. Stocking and T.M. Murphy.  2006.  Plant Biology, Second Edition.  Thomson Brooks/Cole, Belmont, CA, 603 pp.

Shu J., Schellhorn, H.E., Murphy, T.M.  2006.  Stationary phase-induction of      G--> T mutations in Escherichia coli.  Mutation Research 596:106-112.

Dunbar, M., Murphy, T.M.  2009.  DNA analysis of natural fiber rope.  Journal of Forensic Sciences 54:108-113.

Murphy TM, Belmonte M, Shu S, Britt AB, Hatteroth J.  2009.  Requirement for Abasic Endonuclease Gene Homologues in Arabidopsis Seed Development. PLoS ONE 4(1): e4297 doi:10.1371/journal.pone.0004297

Murphy TM, Guo Y-Y.  2010  Antimutagenic specificities of two plant glycosylases, oxoguanine glycosylase and formamidopyrimidine glycosylase, assayed in vitro. Biochemical and Biophysical Research Communications 392:335-339.

Ben-Yehuda N, Murphy TM. 2010.  Rope from the Christmas Cave:  In search of the Talmudic hemp.  Archaeological Textiles Newsletter 50: 14-19.

Murphy TM, Ben-Yehuda N, Taylor RE, Southon JR.  2011.  Hemp in Ancient Rope and Fabric from the Christmas Cave in Israel:  Talmudic Background and DNA Sequence Identification.  Journal of Archaeological Science 38: 2579-2588.  http://dx.doi.org/10.1016/j.jas.2011.05.004

Murphy TM and Bola, G.  2013.   DNA identification of Salvia divinorum samples.  Forensic Science International—Genetics.  7:189-193.  http://dx.doi.org/10.1016/j.fsigen.2012.04.004

Ng AE, Sandoval E and Murphy TM.  2015.  Identification and individualization of Lophophora using DNA analysis of the trnL/trnF region and rbcL gene.  Journal of Forensic Sciences.  doi: 10.1111/1556-4029.12936

Adams KR, Johnson KL, and Murphy TM.  2015.  Prehistoric Puebloan yucca (Yucca) quids with wild tobacco (Nicotiana) contents: molecular and morphological evidence from Antelope Cave, northwestern Arizona.  Journal of Field Archaeology 40:310-324.  doi 10.1179/2042458214Y.0000000006

Murphy TM, and Potter D.  2015.  Genetic distinctions among oaks in the University of California, Davis arboretum:  contributions to oak phylogeny.  http://arboretum.ucdavis.edu/research.aspx   International Oaks (in press)

Graham AF, Adams KR, Smith SJ and Murphy TM.  2017.  A New Record of Domesticated Little Barley (Hordeum pusillum Nutt.) in Colorado:  Travel, Trade, or Independent Domestication.  Kiva: Journal of Southwestern Anthropology and History (in press).

Jaradah M, Potter, D., Sandoval E, and Murphy TM.   Dorstenia:  Evolution of Unusual Tropical Plants.  Haseltonia (submitted).

 

INSTRUCTIONAL MATERIALS

 

Murphy, T.M. 1977. Heredity I:  traits, genes, and alleles.  Biology Media, Berkeley, California (Slide/tape instructional module--now published by Carolina Biological Supply).

Murphy, T.M. 1977. Heredity II:  multiple gene and chromosomes.  Biology Media, Berkeley, California (Slide/tape instructional module--now published by Carolina Biological Supply).

Murphy, T.M. 1977. Heredity III:  sex chromosomes and sex linkage.  Biology Media, Berkeley, California (Slide/tape instructional module--now published by Carolina Biological Supply).

Murphy, T.M. 1977. The chemistry of nucleic acids.  Biology Media, Berkeley, California (Slide/tape instructional module--now published by Carolina Biological Supply).

Murphy, T.M. 1977. Template functions of DNA.  Biology Media, Berkeley, California (Slide/tape instructional module--now published by Carolina Biological Supply).

Murphy, T.M. 1977. Protein synthesis.  Biology Media, Berkeley, California (Slide/tape instructional module--now published by Carolina Biological Supply).

Murphy, T.M. 1977. Regulation of protein synthesis:  the operon hypothesis.  Biology Media, Berkeley, California (Slide/tape instructional module--now published by Carolina Biological Supply).

Murphy, T.M. 1978. The genetic material.  Biology Media, Berkeley, California (Slide/tape instructional module--now published by Carolina Biological Supply).

Murphy, T.M. 1978. Genetic engineering.  Biology Media, Berkeley, California (Slide/tape instructional module--now published by Carolina Biological Supply).

Murphy, T.M. 1980. Regulation of gene expression in eukaryotes.  Biology Media, Berkeley, California (Slide/tape instructional module--now published by Carolina Biological Supply).

Murphy, T.M. 1982. Plant tissue culture:  the basic concepts.  Biology Media, Berkeley, California (Slide/tape instructional module--now published by Carolina Biological Supply).

 

ABSTRACTS

 

Murphy, T.M. and M.P. Gordon.  1970.  UV-irradiation of Nicotiana tabacum:  effects on photoreactivation of TMV-RNA.  Proc. Pacific Slope Biochemical Conf., San Diego, CA, June.

Gordon, M.P., C.-W. Huang, J. Hurter and T.M. Murphy. 1971.  Studies on the photoreactivation of ribonucleic acids.  Federation Proc. 30:1154.

Murphy, T.M., L.A. Wright, Jr. and J.B. Murphy. 1974.  Inhibition of protein synthesis in tobacco cells.  Proc. Pacific Slope Biochemical Conf., August 27.

Murphy, T.M., L.A. Wright, Jr. and H.E. Street. 1978. Lethal and mutagenic effects of UV light on cultured rose cells.  Proc. 4th Intl. Cong. Plant Tissue and Cell Culture, Calgary, Canada, August 20-25.

Murphy, T.M., J.B. Murphy and C.M. Hamilton. 1979. Selection of a strain of Rosa damascena cultured cells resistant to far-UV light.  Proc. 7th Annual Meeting, Amer. Soc. for Photobiology, Asilomar, CA June 24-28.

Wright, L.A., Jr., T.M. Murphy and R.L. Travis. 1979. The effect of ultraviolet radiation on an enriched wheat root plasma membrane vesicle system.  Plant Physiology 63:s1525.

Imbrie, C.W. and T.M. Murphy. 1980. Chlorate resistant strains of Rosa damascena cultured cells.  Plant Physiology 65:s37.

Imbrie, C.W. and T.M. Murphy. 1981. UV-action spectrum (254-405 nm) for inhibition of a K+-stimulated ATPase from the plasma membrane of Rosa damascena.  Proc. Annual Meeting, AAAS, Pacific Division, Eugene, OR, June 14-19.

Murphy T.M. and C. Wilson. 1981.  UV-induced perturbation sin membrane function of cultured rose cells.  Proc. Annual Meeting, AAAS, Pacific Division, Eugene, OR, June 14-19.

Murphy, T.M. 1982.  UV-induced efflux of K+ from suspension-cultured rose cells.  Proc. 10th. Annual Meeting, Amer. Soc. for Photobiology, Vancouver, B.C., June 27-July 1.

Imbrie, C.W. and T.M. Murphy. 1982. Solubilization of UV action spectrum for inhibition of K+-stimulated ATPase from the plasma membrane of Rosa damascena.  Plant Physiology 69:s94.

Wilson, C. and T.M. Murphy. 1982. Cyanide-resistant respiration in suspension cultured cells of Rosa damascena.  Plant Physiology 69:s49.

Murphy, T.M. 1982.  Membranes as UV targets.  Abstracts of workshop, “Effects of UV on Plants.”  Association Internationale de Photobiologie and Indian Photobiology Society, Delhi, November 1-5.

Kakazu, K.K. and T.M. Murphy. 1983. Water relations and cell wall characteristics of cultured rose cells.  Plant Physiology 71:s418.

Imbrie, C.W. and T.M. Murphy. 1983. Mechanism of UV inactivation of rose plasma membrane ATPases.  Plant Physiology 71:s85.

Imbrie, C.W. and T.M. Murphy. 1983. Plant plasma membrane ATPase:  a UV chromophore?  Photochemistry and Photobiology 37(supplement):TAM-D8.

Levy, A. and T.M. Murphy. 1984. Cell cultures for breeding Papaver species with altered morphinan spectra.  Plant Tissue Culture and Its Agricultural Applications--Proceedings.  University of Nottingham, Sutton Bonington, UK, September 17-21.

Murphy, T.M. 1985. Stimulation of K+ efflux by UV-B light.  Abstracts of the 18th European Symposium--Photomorphogenesis in Plants.  Wageningen, Netherlands, April 15-19.

Björn, L.O. and T.M. Murphy. 1985. Computer calculation of solar ultraviolet radiation at ground level.  Proceedings of the XIV Nordiska Kongressen for Växtfysiologi, Ljungskile, Sweden, August 12-17.

Murphy, T.M., J. Hellergren and S. Widell. 1986. Comparison of plasma membranes purified by sucrose gradient and phase partition methods.  Plant Physiology 80:s139.

Murphy, T.M. 1990. Protein synthesis inhibitors stimulate K+ release from rose cells.  J. Cellular Biochemistry 11B:91.

Murphy, T.M. and A.J. Huerta. 1987.  A test of the mechanism of UV-induced K+  efflux.  Plant Physiology 83:s78.

Huerta, A.J. and T.M. Murphy. 1988. Transient K+  channels in UV-irradiated cultured rose cells.  Plant Physiology 86:s82.

Kakazu, K.K. and T.M. Murphy. 1988. The role of ribosomal protein phosphorylation in triggering cell proliferation in rose cell suspension cultures. Plant Physiology 86:s119.

Murphy, T.M. and A.J. Huerta. 1990. UV-induced synthesis of hydrogen peroxide in cultured rose cells.  Proc. Workshop on Interaction of UV-B and Crop Plants.  Gainesville, FL, February 13-15.

Murphy, T.M. and A.J. Huerta. 1989. UV-induced synthesis of hydrogen peroxide.  Plant Physiology 89:s128.

Benes, S.E., T.M. Murphy, P.D. Anderson, J.L. Houpis, and A. Lauchli. 1990. Antioxidant activity in mature branches on ponderosa pine (Pinus ponderosa) under long-term, low concentration ozone exposure.  Plant Physiology 93:s100.

Murphy, T.M. and T. Arnott. 1990. Elicitor and UV-B effects on ion transport in rose cells.  Physiologia Plantarum 79:A101.

Grobe, C.W. and T.M. Murphy. 1990. The effects of ultraviolet-B radiation on the intertidal alga Ulva lactuca.  Proceedings of the Annual Meeting, AAAS, Pacific Division, Davis, CA, June 19-23.

Murphy, T.M., C.-K. Auh, R. Shorr, and C. Grobe. 1991. Modification of plasma membrane electron transport in cultured rose cells by UV-C radiation and fungal elicitor.  Plant Physiology 96:s142.

Grobe, C.W. and T.M. Murphy. 1991. Extensibility of Ulva expansa treated with UV-B.  Plant Phyisology 96:s120.

Qian, Y.-C. and T.M. Murphy. 1992. Regulation of plasma membrane ATPase activity by glutathione in rose cells irradiated with UV-C. Plant Physiology 99:s70.

Benes, S.E., T.M. Murphy, P.D. Anderson, J.L.J. Houpis, and A. Lauchli. 1993. Antioxidant activity and photosynthesis in mature branches on ponderosa pine exposed to ozone and acid precipitation.  Plant Physiology 96:s113.

Benes, S.E., T.M. Murphy, P.D. Anderson, J.L.J. Houpis, and A. Lauchli. 1993. Antioxidant enzyme activity and photosynthesis in asymptomatic and symptomatic clones of Ponderosa pine exposed to ozone.  Interantional Symposium on Gaseous Air Pollutants and Plant Metabolism.  Blacksburg, VA, June.

Qian, Y.-C., T. Nguyen and T.M. Murphy. 1993. Effect of washing on the plasma membrane and on stress reactions of cultured rose cells.  Proc. 9th International Workshop on Plant Membrane Biology. Monterey, CA, July 19-24.

Murphy, T.M. 1993.  UV-induced events at plant plasma membranes.  Proc. 11th International Congress on Photobiology, Kyoto, Japan, September 7-12.

Murphy, T.M. 1994. use of a low-cost silicon diode-array spectroradiometer to measure UV-B.  Proceedings, Workshop on Critical Issues in Air Ultraviolet Metrology, NIST, Gaithersburg, MD, May.

Martin, C.P. and T.M. Murphy. 1994.  Properties of UV-specific endonuclease from tobacco leaves.  Photochemistry and Photobiology 59(Special Issue):TPM-B6.

Murphy, T.M., C. Keller and E. VanVolkenburgh. 1994. Effect of UV-C radiation on cell-attached patches of Rosa damascena protoplasts.  Plant Physiology 105:s144.

Auh, C.K. and T.M. Murphy. 1994. Plasma membrane redox enzyme is involved in the formation of active oxygen species by fungal elicitor in suspension-cultured rose cells.  Plant Physiology 105:s161.

Murphy, T.M. 1995. Photoinactivation of the plasma membrane superoxide synthases from rose cells (Rosa damascena).  Abstracts, Joint Congress, European Society for Photobiology/American Society for Photobiology, Cambridge, UK, Sept 3-8.

C.P. Martin and T.M. Murphy. 1996. Purification and partial characterization of a UV-damage specific endonuclease from tobacco leaves.  Plant Physiology 111:s103.

Murphy, T.M., G.P. Bolwell, D.R. Davies, C. Gerrish. 1997.  Comparative biochemistry of the oxidative burst produced by rose and French bean cells reveals two distinct mechanisms.  Abstracts, NSF/UCD Plant Cell Biology Training Grant Spring Symposium, Davis, CA, March 21-25.

Murphy, T.M., C.K. Auh,  G.P. Bolwell, D.R. Davies, C. Gerrish. 1997. Two distinct mechanisms for the production of hydrogen peroxide by rose and French bean cells.  Abstracts, XVIII Congress of the Scandinavian Society for Plant Physiology, Uppsala, Sweden, June 12-17.

Martin, C.P. and T.M. Murphy. 1997.  A novel endonuclease from tobacco leaves that preferentially cleaves UV-damaged DNA.  Plant Physiology 114:s151.

Murphy, T.M., H.D. Vu, H. Chan, A.R. Cross.  1997. Are plant plasma membrane NAD(P)H oxidases related to the enzyme in mammalian neutrophils?  Plant Physiology 114:s227.

Murphy, T.M., H. Asard and A.R. Cross.  1998.  Possible sources of reactive oxygen during the oxidative burst in plants.  Abstracts, Conference on “Plasma Membrane Redox Systems and their role in Biological Stress and Disease,”   Antwerp, April 3-8.

Martin, C.P., H. Vu and T.M. Murphy.  1998.  Substrate specificity of the tobacco UV-endonuclease.  Photochemistry and Photobiology 67(Special Issue):SPM-E26.

Gao M.-J. and T.M. Murphy.  1999.  Characterization of two cDNAs from Arabidopsis thaliana encoding homologs of bacterial Fapy-DNA glycosylase and showing function in DNA repair.  Proceedings of the XVI International Botanical Congress

Murphy, T.M. and H.D. Bestman.  1999.  Mathematical plant:  transpiration--modeling transpiration using a spreadsheet-based computer program.  Plant Physiology

Bestman, H.D. and T.M. Murphy.  1999.  Mathematical plant:  photosynthesis--modeling transpiration using a spreadsheet-based computer program.  Plant Physiology

Lin, C.-H., W.-W. Sung and T.M. Murphy.  1999.  Fluctuation of glutathione content in leaves as a measure to access chilling tolerance of two mung bean cultivars.  Plant Physiology

Murphy, T.M. and M.-J. Gao.  2000.  Multiple forms of formamidopyrimidine-DNA glycosylase produced by alternative splicing in Arabidopsis thaliana.  Third Internet Photochemistry and Photobiology Conference (http://www.photobiology.com/photobiology2000/index.htm)

Berry, A.M., T.M. Murphy, K. Pawlowski, P.A. Okubara, K.R. Jacobsen.  2001. Role of arginine in root nodule nitrogen metabolism of Datisca glomera.  13th International Congress on Nitrogen Fixation, Hamilton, ON, July 2-7.

Murphy, T.M.  2002.  An Oxoguanine Glycosylase Knockout Mutant in Arabidopsis.  Proceedings of the 30th Annual Meeting, American Society for Photobiology, Quebec, PQ, Canada, July 13-17.

Krasnow, M.N., H. Nguyen, T.M. Murphy.  2002. Environmental control of secondary metabolism in grape cell suspension culture.  Annual Meeting, American Society of Plant Biologists, Denver, CO, August 3-7.

Yu, C.-W., T.M. Murphy, W.-W. Sung, C.-H. Lin.  2002. H2O2 treatment induces glutathione accumulation and chilling tolerance in mung bean. Annual Meeting, American Society of Plant Biologists, Denver, CO, August 3-7.

Krasnow, M.N., T.M. Murphy.  2003.  Environmental control of phenolic biosynthesis in grape cell suspensions.  54th Annual Meeting, American Society Enology and Viticulture, Reno, NV, June 18-20.

Yu, C.-W., T.M. Murphy, P.-L. Lu, C.-H. Lin.  2003.  Hydrogen peroxide-induced chilling tolerance in mung beans mediated through ABA-independent glutathione accumulation.  Annual Meeting, American Society of Plant Biologists, Honolulu, HI, July 25-30.

Shu, J, T.M. Murphy.  2004.  Starvation-induction and base excision repair of G -> T mutations in Escherichia coli.  Annual Meeting, American Society for Photobiology, Seattle, WA, July 10-14.

Murphy, T.M. 2006.  Repair of oxidized DNA bases in Arabidopsis.  International Society for Plant Molecular Biology, Adelaide, August 20-25.

Murphy, T.M., K.R. Adams, K.L. Johnson.  2015.  DNA identification of prehistoric Puebloan quids.  Society for American Archaeology, April 13-19.