Resources for Cell And Molecular Biologists

Places to search for Arabidopsis gene inserts and order seeds

• Syngenta SAIL project
  

Databases

• TAIR = The Arabidopsis Information Resource
• NCBI = Enrtrez, Blast, etc.
• Saccharomyces Genome Database
  
• NIBB PHYSCObase
• JGI

Targeting prediction software

• ChloroP
• SignalP
• TargetP
• Wolf PSORT
• BaCelLo
• Predator
• YLOC
• SherLoc2
• Cello
• MultiLoc2
• ESLPred2
  
  
• TatP 1.0
• TatFIND

Transmembrane span prediction

• PRED-TMR Text output, and can use this information to make TMRPRES drawings
• TMHMM Good graphics and text information
• TMPRED Tabulated output, ok
• DAS Transmembrane Prediction Server Tabulated output and hydropathy type graph
• Prediction server at SPLIT Nice hydropathy output, and also a plot of the hydrophobic moment

Software for specific applications

• ExPASy site for basic protein analysis
• Center for Biological Sequence Analysis (von Heijne)
• EST alignments
  
• ClustalW Multiple Sequence Alignment
  
• Link to software available from TIGR
  
• AMPHISEEK calculates hydrophobic moment
• TMRPres2D is a good program for illustrating membrane proteins

Techniques

Vendors and Suppliers

• BioSupplyNet
  

Other useful or interesting sites